Sakowv30026828m.g (Saccoglossus kowalevskii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		Sakowv30026828m.g T237736_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.945 0.945
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.945 0.945
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.945 0.945
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.908 0.908
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.908 0.908
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.908 0.908
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.945 0.945
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.945 0.945
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.945 0.945
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.945 0.945
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.945 0.945
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.908 0.908
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.902 0.902
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.902 0.902
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.940 0.940
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.940 0.940
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.940 0.940
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.940 0.940
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.940 0.940
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.902 0.902
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.902 0.902
ey
M03896_2.00 		Drosophila melanogaster
CKAATTAD
HTAATTMG		 SELEX
Nitta et al.(2015)
ey_1 		0.897 0.897
ey
M03897_2.00 		Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD		 SELEX
Nitta et al.(2015)
ey_2 		0.923 0.923
ey
M03898_2.00 		Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW		 SELEX
Nitta et al.(2015)
ey_3 		0.923 0.923
toy
M03899_2.00 		Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA		 SELEX
Nitta et al.(2015)
toy_1 		0.907 0.907
toy
M03900_2.00 		Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN		 SELEX
Nitta et al.(2015)
toy_2 		0.907 0.907
toy
M03901_2.00 		Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB		 SELEX
Nitta et al.(2015)
toy_3 		0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23949264_peptide Paired box 28 152
23949264_peptide Homeodomain 254 310
23949265_peptide Paired box 28 152
23949265_peptide Homeodomain 254 310
23949266_peptide Paired box 28 152
23949266_peptide Homeodomain 254 310
23949267_peptide Paired box 28 152
23949267_peptide Homeodomain 254 310
23949268_peptide Paired box 28 152
23949268_peptide Homeodomain 242 290
23949269_peptide Paired box 11 135
23949269_peptide Homeodomain 237 293

Links

Other Homeodomain,Paired box family TFs
Other Saccoglossus kowalevskii TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pax6a Danio rerio ENSDARG00000103379 I 0.956
ENSAMXG00000013008 Astyanax mexicanus ENSAMXG00000013008 I 0.956
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.956
PAX6 Felis catus ENSFCAG00000007094 I 0.951
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.951
pax6b Danio rerio ENSDARG00000045936 I 0.951
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.951
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.951
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.951
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.951
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.951
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.951
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.951
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.951
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.951
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.951
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.951
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.951
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.951
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.945
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.945
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.945
PAX6 Gallus gallus ENSGALG00000012123 I 0.945
PAX6 Sus scrofa ENSSSCG00000013320 I 0.945
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.945
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.945
PAX6 Microcebus murinus ENSMICG00000004089 I 0.945
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.945
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.945
pax6 Xenopus tropicalis XB-GENE-484088 I 0.945
Pax6 Mus musculus ENSMUSG00000027168 D 0.945
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.945
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.945
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.945
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.945
PAX6 Homo sapiens ENSG00000007372 D 0.945
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.945
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.945
PAX6 Procavia capensis ENSPCAG00000005165 I 0.945
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.945
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.945
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.945
PAX6 Bos taurus ENSBTAG00000004561 I 0.945
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.945
ENSTRUG00000017375 Takifugu rubripes ENSTRUG00000017375 I 0.945
pax6b Oryzias latipes ENSORLG00000009913 I 0.945
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.945
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.945
PAX6 Sorex araneus ENSSARG00000011424 I 0.942
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.941
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.940
pax6.L Xenopus laevis XB-GENE-865046 I 0.940
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.940
pax6.S Xenopus laevis XB-GENE-6464331 I 0.940
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.940
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.940
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.936
ENSPPYG00000003386 Pongo abelii ENSPPYG00000003386 I 0.934
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.934
ENSGMOG00000019087 Gadus morhua ENSGMOG00000019087 I 0.934
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.934
PAX6 Echinops telfairi ENSETEG00000002655 I 0.931
CGI_10027695 Crassostrea gigas CGI_10027695 I 0.923
ey Drosophila melanogaster FBgn0005558 D 0.923
L798_11483 Zootermopsis nevadensis L798_11483 I 0.923
PAX6 Equus caballus ENSECAG00000021000 I 0.923
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.923
GK13702 Drosophila willistoni FBgn0215710 I 0.918
ey Drosophila sechellia FBgn0068720 I 0.918
ey Drosophila persimilis FBgn0043659 I 0.918
ey Drosophila virilis FBgn0028754 I 0.918
GE14559 Drosophila yakuba FBgn0232158 I 0.918
GF22818 Drosophila ananassae FBgn0099812 I 0.918
GI14081 Drosophila mojavensis FBgn0136835 I 0.918
SMAR013763 Strigamia maritima SMAR013763 I 0.918
TC008176 Tribolium castaneum TC008176 I 0.918
ey Drosophila pseudoobscura FBgn0018538 I 0.918
DAPPUDRAFT_249991 Daphnia pulex DAPPUDRAFT_249991 I 0.918
ACYPI067710 Acyrthosiphon pisum ACYPI067710 I 0.918
GG16399 Drosophila erecta FBgn0108631 I 0.918
PHUM097050 Pediculus humanus PHUM097050 I 0.913
GL17563 Drosophila persimilis FBgn0155166 I 0.912
GI14042 Drosophila mojavensis FBgn0136796 I 0.912
GK13683 Drosophila willistoni FBgn0215691 I 0.912
GH23963 Drosophila grimshawi FBgn0131420 I 0.912
GJ13300 Drosophila virilis FBgn0200526 I 0.912
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.912
NV17076 Nasonia vitripennis NV17076 I 0.912
LotgiG133720 Lottia gigantea LotgiG133720 I 0.912
TC007409 Tribolium castaneum TC007409 I 0.912
Hsal_09597--XP_394648.3_APIME Harpegnathos saltator Hsal_09597--XP_394648.3_APIME I 0.912
GA27636 Drosophila pseudoobscura FBgn0249001 I 0.912
GB41504 Apis mellifera GB41504 I 0.912
Cflo_00481--XP_394648.3_APIME Camponotus floridanus Cflo_00481--XP_394648.3_APIME I 0.912
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.907
GE14563 Drosophila yakuba FBgn0232162 I 0.907
GM13021 Drosophila sechellia FBgn0167952 I 0.907
NV15820 Nasonia vitripennis NV15820 I 0.907
GB50342 Apis mellifera GB50342 I 0.907
GF21877 Drosophila ananassae FBgn0098877 I 0.907
L798_00712 Zootermopsis nevadensis L798_00712 I 0.907
toy Drosophila melanogaster FBgn0019650 D 0.907
GG16402 Drosophila erecta FBgn0108634 I 0.907
D918_01592 Trichuris suis D918_01592 I 0.901
GD24416 Drosophila simulans FBgn0195753 I 0.901
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.896
TMUE_s0038005250 Trichuris muris TMUE_s0038005250 I 0.896
TTRE_0000173501 Trichuris trichiura TTRE_0000173501 I 0.896
HelroG80374 Helobdella robusta HelroG80374 I 0.896
ISCW021772 Ixodes scapularis ISCW021772 I 0.895
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.890
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.890
SMU15027897 Schmidtea mediterranea SMU15027897 I 0.879
ADAC001560 Anopheles darlingi ADAC001560 I 0.872
CPIJ006398 Culex quinquefasciatus CPIJ006398 I 0.871
CpipJ_CPIJ006398 Culex pipiens CpipJ_CPIJ006398 I 0.871
ACHR009845 Anopheles christyi ACHR009845 I 0.871
AMIN002132 Anopheles minimus AMIN002132 I 0.871
AFUN011570 Anopheles funestus AFUN011570 I 0.871
ADIR000973 Anopheles dirus ADIR000973 I 0.871
ASTEI06205 Anopheles stephensi ASTEI06205 I 0.871
AATE014626 Anopheles atroparvus AATE014626 I 0.871
EFV57892 Trichinella spiralis EFV57892 I 0.868
ASIS012967 Anopheles sinensis ASIS012967 I 0.868
AQUA008308 Anopheles quadriannulatus AQUA008308 I 0.868
ASTEI06200 Anopheles stephensi ASTEI06200 I 0.868
AGAP000063 Anopheles gambiae AGAP000063 I 0.868
AARA001115 Anopheles arabiensis AARA001115 I 0.868
AALB006354 Anopheles albimanus AALB006354 I 0.868
AMIN002127 Anopheles minimus AMIN002127 I 0.868
AGAP000067 Anopheles gambiae AGAP000067 I 0.866
AQUA008313 Anopheles quadriannulatus AQUA008313 I 0.866
AEPI005798 Anopheles epiroticus AEPI005798 I 0.866
AARA001110 Anopheles arabiensis AARA001110 I 0.866
AMEM002691 Anopheles merus AMEM002691 I 0.866
AMEC013051 Anopheles melas AMEC013051 I 0.866
AFAF017899 Anopheles farauti AFAF017899 I 0.866
L892_g3713 Steinernema scapterisci L892_g3713 I 0.863
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.863
AFUN011575 Anopheles funestus AFUN011575 I 0.863
AMEC021831 Anopheles melas AMEC021831 I 0.863
ACUA016154 Anopheles culicifacies ACUA016154 I 0.862
AALB006643 Anopheles albimanus AALB006643 I 0.862
csin110224 Clonorchis sinensis csin110224 I 0.862
ISCW006352 Ixodes scapularis ISCW006352 I 0.860
ADAC003449 Anopheles darlingi ADAC003449 I 0.860
AFAF009619 Anopheles farauti AFAF009619 I 0.860
ACHR008920 Anopheles christyi ACHR008920 I 0.859
PAX6 Ornithorhynchus anatinus ENSOANG00000015149 I 0.858
AAEL002321 Aedes aegypti AAEL002321 I 0.857
Afo_R014630 Aptenodytes forsteri Afo_R014630 I 0.853
PAX6 Pan troglodytes ENSPTRG00000003474 I 0.849
CBN04513 Caenorhabditis brenneri CBN04513 I 0.846
T265_09221 Opisthorchis viverrini T265_09221 I 0.846
Smp_160670 Schistosoma mansoni Smp_160670 I 0.846
CRE07226 Caenorhabditis remanei CRE07226 I 0.846
ENSTSYG00000011965 Tarsius syrichta ENSTSYG00000011965 I 0.841
A_05170 Schistosoma haematobium A_05170 I 0.835
tetur09g00660 Tetranychus urticae tetur09g00660 I 0.835
SMTD_0000837201 Schistosoma mattheei SMTD_0000837201 I 0.835
SPAL_0001466800 Strongyloides papillosus SPAL_0001466800 I 0.835
SSTP_0001059400 Strongyloides stercoralis SSTP_0001059400 I 0.835
SVE_0819200 Strongyloides venezuelensis SVE_0819200 I 0.835
vab-3 Caenorhabditis elegans WBGene00006870 I 0.835
RSKR_0000862000 Rhabditophanes kr3021 RSKR_0000862000 I 0.835
ACUA021227 Anopheles culicifacies ACUA021227 I 0.835
PTRK_0000512100 Parastrongyloides trichosuri PTRK_0000512100 I 0.835
ASIS012617 Anopheles sinensis ASIS012617 I 0.834
csin101119 Clonorchis sinensis csin101119 I 0.834
HelroG173449 Helobdella robusta HelroG173449 I 0.830
AEPI005803 Anopheles epiroticus AEPI005803 I 0.830
T265_14971 Opisthorchis viverrini T265_14971 I 0.829
CpipJ_CPIJ006390 Culex pipiens CpipJ_CPIJ006390 I 0.824
CPIJ006390 Culex quinquefasciatus CPIJ006390 I 0.824
D917_00854 Trichinella nativa D917_00854 I 0.823
Smp_170750 Schistosoma mansoni Smp_170750 I 0.819
MCINX016249 Melitaea cinxia MCINX016249 I 0.819
D915_07175 Fasciola hepatica D915_07175 I 0.813
BXY_1643500 Bursaphelenchus xylophilus BXY_1643500 I 0.813
MCOS_0000220101 Mesocestoides corti MCOS_0000220101 I 0.797
ADIR000968 Anopheles dirus ADIR000968 I 0.792
fgenesh2_pg.scaffold_199000043 Branchiostoma floridae fgenesh2_pg.scaffold_199000043 I 0.785
fgenesh2_pg.scaffold_23000118 Branchiostoma floridae fgenesh2_pg.scaffold_23000118 I 0.771
LLOJ005149 Lutzomyia longipalpis LLOJ005149 I 0.770
TsM_000166900 Taenia solium TsM_000166900 I 0.758
MESCA003564 Megaselia scalaris MESCA003564 I 0.758
HmN_000466300 Hymenolepis microstoma HmN_000466300 I 0.753
ENSMEUG00000015900 Macropus eugenii ENSMEUG00000015900 I 0.749
TTAC_0000231001 Hydatigera taeniaeformis TTAC_0000231001 I 0.747
NEMVEDRAFT_v1g239535 Nematostella vectensis NEMVEDRAFT_v1g239535 I 0.742
EmuJ_000781700 Echinococcus multilocularis EmuJ_000781700 I 0.734
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.731
PAX6 Tursiops truncatus ENSTTRG00000002399 I 0.726
PAX7 Choloepus hoffmanni ENSCHOG00000005130 I 0.718
ENSVPAG00000012251 Vicugna pacos ENSVPAG00000012251 I 0.718
ENSAPLG00000004928 Anas platyrhynchos ENSAPLG00000004928 I 0.709
Gfo_R001537 Geospiza fortis Gfo_R001537 I 0.709
ENSFALG00000010839 Ficedula albicollis ENSFALG00000010839 I 0.709
Aan_R006618 Calypte anna Aan_R006618 I 0.709
PAX2 Echinops telfairi ENSETEG00000014765 I 0.705
TriadG3502 Trichoplax adhaerens TriadG3502 N 0.704
PAX4 Homo sapiens ENSG00000106331 D 0.702