CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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T265_14971
(
Opisthorchis viverrini
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
T265_14971
T237899_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.829
0.829
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.829
0.829
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.829
0.829
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD
HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.829
0.829
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.829
0.829
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.829
0.829
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.829
0.829
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.829
0.829
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.829
0.829
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.829
0.829
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.829
0.829
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.829
0.829
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.829
0.829
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.829
0.829
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.829
0.829
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.829
0.829
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.829
0.829
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.829
0.829
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.823
0.823
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.823
0.823
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.823
0.823
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.823
0.823
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.823
0.823
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.823
0.823
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.805
0.805
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.805
0.805
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.805
0.805
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T265_14971
Paired box
21
142
GHSGVNQLGGMFVNGRPLPDSTRQRIIELAHSGARPCDISRILQVSNGCVSKILCRYYETGSIRPKAIGGSKPRVATGSVVAKIDLYKRECPSIFAWEIRDRLLQEGICTPDNIPSRRRPRV
T265_14971
Homeodomain
340
381
SLEFERTHYPDVFTREKLSTQILLPEARIQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Opisthorchis viverrini
TFs
174 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
csin110224
Clonorchis sinensis
csin110224
I
0.957
D915_07175
Fasciola hepatica
D915_07175
I
0.902
Smp_160670
Schistosoma mansoni
Smp_160670
I
0.884
SMTD_0000837201
Schistosoma mattheei
SMTD_0000837201
I
0.878
A_05170
Schistosoma haematobium
A_05170
I
0.878
SMU15027897
Schmidtea mediterranea
SMU15027897
I
0.860
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.848
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.848
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.841
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.841
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.841
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.841
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.841
pax6a
Danio rerio
ENSDARG00000103379
I
0.835
TC008176
Tribolium castaneum
TC008176
I
0.835
Smp_170750
Schistosoma mansoni
Smp_170750
I
0.835
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.835
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.829
PAX6
Monodelphis domestica
ENSMODG00000009611
I
0.829
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.829
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.829
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.829
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.829
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.829
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.829
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.829
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.829
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.829
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.829
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.829
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.829
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.829
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.829
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.829
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.829
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.829
Pax6
Mus musculus
ENSMUSG00000027168
D
0.829
ey
Drosophila melanogaster
FBgn0005558
D
0.829
PAX6
Bos taurus
ENSBTAG00000004561
I
0.829
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.829
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.829
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.829
Sakowv30026828m.g
Saccoglossus kowalevskii
Sakowv30026828m.g
I
0.829
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.829
EFV57892
Trichinella spiralis
EFV57892
I
0.829
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.829
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.829
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.829
PAX6
Homo sapiens
ENSG00000007372
D
0.829
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.829
PAX6
Gallus gallus
ENSGALG00000012123
I
0.829
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.829
ACYPI067710
Acyrthosiphon pisum
ACYPI067710
I
0.829
pax6b
Danio rerio
ENSDARG00000045936
I
0.829
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.829
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.829
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.823
GG16399
Drosophila erecta
FBgn0108631
I
0.823
ey
Drosophila persimilis
FBgn0043659
I
0.823
ey
Drosophila virilis
FBgn0028754
I
0.823
ey
Drosophila sechellia
FBgn0068720
I
0.823
GI14081
Drosophila mojavensis
FBgn0136835
I
0.823
GK13702
Drosophila willistoni
FBgn0215710
I
0.823
GE14559
Drosophila yakuba
FBgn0232158
I
0.823
ey
Drosophila pseudoobscura
FBgn0018538
I
0.823
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.823
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.823
ENSCING00000006503
Ciona intestinalis
ENSCING00000006503
I
0.817
L798_00712
Zootermopsis nevadensis
L798_00712
I
0.817
HelroG80374
Helobdella robusta
HelroG80374
I
0.817
TTRE_0000173501
Trichuris trichiura
TTRE_0000173501
I
0.817
SMAR013763
Strigamia maritima
SMAR013763
I
0.817
DAPPUDRAFT_249991
Daphnia pulex
DAPPUDRAFT_249991
I
0.811
DAPPUDRAFT_249978
Daphnia pulex
DAPPUDRAFT_249978
I
0.811
ACYPI008177
Acyrthosiphon pisum
ACYPI008177
I
0.811
GE14563
Drosophila yakuba
FBgn0232162
I
0.805
GF21877
Drosophila ananassae
FBgn0098877
I
0.805
ACUA021227
Anopheles culicifacies
ACUA021227
I
0.805
ENSCSAVG00000007987
Ciona savignyi
ENSCSAVG00000007987
I
0.805
toy
Drosophila melanogaster
FBgn0019650
D
0.805
TC007409
Tribolium castaneum
TC007409
I
0.805
ENSTNIG00000002471
Tetraodon nigroviridis
ENSTNIG00000002471
I
0.805
GG16402
Drosophila erecta
FBgn0108634
I
0.805
GM13021
Drosophila sechellia
FBgn0167952
I
0.805
AEPI005803
Anopheles epiroticus
AEPI005803
I
0.799
AAEL002321
Aedes aegypti
AAEL002321
I
0.787
ISCW021772
Ixodes scapularis
ISCW021772
I
0.787
PAX6
Sorex araneus
ENSSARG00000011424
I
0.786
HelroG173449
Helobdella robusta
HelroG173449
I
0.780
T265_09221
Opisthorchis viverrini
T265_09221
I
0.780
PAX6
Echinops telfairi
ENSETEG00000002655
I
0.775
L892_g3713
Steinernema scapterisci
L892_g3713
I
0.774
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.774
PTRK_0000512100
Parastrongyloides trichosuri
PTRK_0000512100
I
0.768
RSKR_0000862000
Rhabditophanes kr3021
RSKR_0000862000
I
0.768
PHUM097050
Pediculus humanus
PHUM097050
I
0.768
tetur09g00660
Tetranychus urticae
tetur09g00660
I
0.768
ISCW006352
Ixodes scapularis
ISCW006352
I
0.762
MCINX016249
Melitaea cinxia
MCINX016249
I
0.762
CGI_10027695
Crassostrea gigas
CGI_10027695
I
0.758
csin101119
Clonorchis sinensis
csin101119
I
0.758
vab-3
Caenorhabditis elegans
WBGene00006870
I
0.756
CpipJ_CPIJ006390
Culex pipiens
CpipJ_CPIJ006390
I
0.756
Ogr12767
Ophisaurus gracilis
Ogr12767
I
0.756
CPIJ006390
Culex quinquefasciatus
CPIJ006390
I
0.756
CBN04513
Caenorhabditis brenneri
CBN04513
I
0.756
Cmyd_10016391
Chelonia mydas
Cmyd_10016391
I
0.756
CRE07226
Caenorhabditis remanei
CRE07226
I
0.756
ENSAMXG00000013008
Astyanax mexicanus
ENSAMXG00000013008
I
0.753
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.753
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.753
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.753
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.753
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.753
PAX6
Equus caballus
ENSECAG00000021000
I
0.753
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.753
NV15820
Nasonia vitripennis
NV15820
I
0.753
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.753
PAX6
Felis catus
ENSFCAG00000007094
I
0.753
GB50342
Apis mellifera
GB50342
I
0.753
L798_11483
Zootermopsis nevadensis
L798_11483
I
0.751
ACUA016154
Anopheles culicifacies
ACUA016154
I
0.750
AALB006643
Anopheles albimanus
AALB006643
I
0.750
CPIJ006398
Culex quinquefasciatus
CPIJ006398
I
0.750
CpipJ_CPIJ006398
Culex pipiens
CpipJ_CPIJ006398
I
0.750
ENSGMOG00000019087
Gadus morhua
ENSGMOG00000019087
I
0.747
AMIN002132
Anopheles minimus
AMIN002132
I
0.744
AATE014626
Anopheles atroparvus
AATE014626
I
0.744
ACHR009845
Anopheles christyi
ACHR009845
I
0.744
AMEM002691
Anopheles merus
AMEM002691
I
0.744
ADIR000973
Anopheles dirus
ADIR000973
I
0.744
AQUA008313
Anopheles quadriannulatus
AQUA008313
I
0.744
AEPI005798
Anopheles epiroticus
AEPI005798
I
0.744
AARA001110
Anopheles arabiensis
AARA001110
I
0.744
AFUN011570
Anopheles funestus
AFUN011570
I
0.744
AFAF017899
Anopheles farauti
AFAF017899
I
0.744
ADAC001560
Anopheles darlingi
ADAC001560
I
0.744
AMEC013051
Anopheles melas
AMEC013051
I
0.744
ASTEI06205
Anopheles stephensi
ASTEI06205
I
0.744
AGAP000067
Anopheles gambiae
AGAP000067
I
0.744
NV17076
Nasonia vitripennis
NV17076
I
0.742
ENSTRUG00000017375
Takifugu rubripes
ENSTRUG00000017375
I
0.742
GB41504
Apis mellifera
GB41504
I
0.742
GF22818
Drosophila ananassae
FBgn0099812
I
0.742
Cflo_00481--XP_394648.3_APIME
Camponotus floridanus
Cflo_00481--XP_394648.3_APIME
I
0.742
Hsal_09597--XP_394648.3_APIME
Harpegnathos saltator
Hsal_09597--XP_394648.3_APIME
I
0.742
D918_01592
Trichuris suis
D918_01592
I
0.742
GD24416
Drosophila simulans
FBgn0195753
I
0.738
TMUE_s0038005250
Trichuris muris
TMUE_s0038005250
I
0.736
BXY_1643500
Bursaphelenchus xylophilus
BXY_1643500
I
0.732
LotgiG133720
Lottia gigantea
LotgiG133720
I
0.731
TsM_000166900
Taenia solium
TsM_000166900
I
0.726
ACHR008920
Anopheles christyi
ACHR008920
I
0.726
GI14042
Drosophila mojavensis
FBgn0136796
I
0.725
GK13683
Drosophila willistoni
FBgn0215691
I
0.725
GA27636
Drosophila pseudoobscura
FBgn0249001
I
0.725
GJ13300
Drosophila virilis
FBgn0200526
I
0.725
GL17563
Drosophila persimilis
FBgn0155166
I
0.725
GH23963
Drosophila grimshawi
FBgn0131420
I
0.725
ASTEI06200
Anopheles stephensi
ASTEI06200
I
0.720
AGAP000063
Anopheles gambiae
AGAP000063
I
0.720
AARA001115
Anopheles arabiensis
AARA001115
I
0.720
AALB006354
Anopheles albimanus
AALB006354
I
0.720
ASIS012967
Anopheles sinensis
ASIS012967
I
0.720
AMIN002127
Anopheles minimus
AMIN002127
I
0.720
AQUA008308
Anopheles quadriannulatus
AQUA008308
I
0.720
ENSPPYG00000003386
Pongo abelii
ENSPPYG00000003386
I
0.719
AFUN011575
Anopheles funestus
AFUN011575
I
0.714
AMEC021831
Anopheles melas
AMEC021831
I
0.714
TTAC_0000231001
Hydatigera taeniaeformis
TTAC_0000231001
I
0.713
LLOJ005149
Lutzomyia longipalpis
LLOJ005149
I
0.713
MCOS_0000220101
Mesocestoides corti
MCOS_0000220101
I
0.709
ADAC003449
Anopheles darlingi
ADAC003449
I
0.702
AFAF009619
Anopheles farauti
AFAF009619
I
0.702