CRE07226 (Caenorhabditis remanei)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		CRE07226 T237248_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.852 0.852
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.852 0.852
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.852 0.852
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.852 0.852
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.852 0.852
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.852 0.852
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.852 0.852
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.852 0.852
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.852 0.852
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.852 0.852
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.852 0.852
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.852 0.852
ey
M03896_2.00 		Drosophila melanogaster
CKAATTAD
HTAATTMG		 SELEX
Nitta et al.(2015)
ey_1 		0.846 0.846
ey
M03897_2.00 		Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD		 SELEX
Nitta et al.(2015)
ey_2 		0.846 0.846
ey
M03898_2.00 		Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW		 SELEX
Nitta et al.(2015)
ey_3 		0.846 0.846
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.846 0.846
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.846 0.846
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.846 0.846
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.846 0.846
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.846 0.846
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.846 0.846
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.846 0.846
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.846 0.846
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.846 0.846
toy
M03899_2.00 		Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA		 SELEX
Nitta et al.(2015)
toy_1 		0.830 0.830
toy
M03900_2.00 		Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN		 SELEX
Nitta et al.(2015)
toy_2 		0.830 0.830
toy
M03901_2.00 		Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB		 SELEX
Nitta et al.(2015)
toy_3 		0.830 0.830
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE07226 Paired box 5 129
CRE07226 Homeodomain 221 277

Links

Other Homeodomain,Paired box family TFs
Other Caenorhabditis remanei TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN04513 Caenorhabditis brenneri CBN04513 I 0.989
vab-3 Caenorhabditis elegans WBGene00006870 I 0.962
RSKR_0000862000 Rhabditophanes kr3021 RSKR_0000862000 I 0.907
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.896
L892_g3713 Steinernema scapterisci L892_g3713 I 0.896
SPAL_0001466800 Strongyloides papillosus SPAL_0001466800 I 0.890
SSTP_0001059400 Strongyloides stercoralis SSTP_0001059400 I 0.890
SVE_0819200 Strongyloides venezuelensis SVE_0819200 I 0.890
PTRK_0000512100 Parastrongyloides trichosuri PTRK_0000512100 I 0.885
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.863
pax6b Oryzias latipes ENSORLG00000009913 I 0.863
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.863
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.863
LotgiG133720 Lottia gigantea LotgiG133720 I 0.863
ENSGMOG00000019087 Gadus morhua ENSGMOG00000019087 I 0.857
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.857
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.857
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.857
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.857
PAX6 Felis catus ENSFCAG00000007094 I 0.857
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.857
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.857
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.857
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.857
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.857
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.857
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.857
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.857
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.857
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.857
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.857
ENSAMXG00000013008 Astyanax mexicanus ENSAMXG00000013008 I 0.857
pax6.L Xenopus laevis XB-GENE-865046 I 0.857
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.857
pax6a Danio rerio ENSDARG00000103379 I 0.857
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.852
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.852
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.852
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.852
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.852
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.852
PAX6 Procavia capensis ENSPCAG00000005165 I 0.852
TMUE_s0038005250 Trichuris muris TMUE_s0038005250 I 0.852
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.852
D918_01592 Trichuris suis D918_01592 I 0.852
pax6.S Xenopus laevis XB-GENE-6464331 I 0.852
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.852
DAPPUDRAFT_249991 Daphnia pulex DAPPUDRAFT_249991 I 0.852
PAX6 Sus scrofa ENSSSCG00000013320 I 0.852
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.852
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.852
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.852
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.852
PAX6 Gallus gallus ENSGALG00000012123 I 0.852
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.852
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.852
PAX6 Homo sapiens ENSG00000007372 D 0.852
pax6b Danio rerio ENSDARG00000045936 I 0.852
PAX6 Bos taurus ENSBTAG00000004561 I 0.852
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.852
pax6 Xenopus tropicalis XB-GENE-484088 I 0.852
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.852
Pax6 Mus musculus ENSMUSG00000027168 D 0.852
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.852
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.852
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.852
PAX6 Microcebus murinus ENSMICG00000004089 I 0.852
ey Drosophila melanogaster FBgn0005558 D 0.846
ENSTRUG00000017375 Takifugu rubripes ENSTRUG00000017375 I 0.846
SMAR013763 Strigamia maritima SMAR013763 I 0.846
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.846
TTRE_0000173501 Trichuris trichiura TTRE_0000173501 I 0.846
Sakowv30026828m.g Saccoglossus kowalevskii Sakowv30026828m.g I 0.846
PAX6 Sorex araneus ENSSARG00000011424 I 0.844
TC008176 Tribolium castaneum TC008176 I 0.841
TC007409 Tribolium castaneum TC007409 I 0.841
GG16399 Drosophila erecta FBgn0108631 I 0.841
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.841
GK13702 Drosophila willistoni FBgn0215710 I 0.841
GE14559 Drosophila yakuba FBgn0232158 I 0.841
ACYPI067710 Acyrthosiphon pisum ACYPI067710 I 0.841
GI14081 Drosophila mojavensis FBgn0136835 I 0.841
ey Drosophila sechellia FBgn0068720 I 0.841
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.841
L798_00712 Zootermopsis nevadensis L798_00712 I 0.841
ey Drosophila pseudoobscura FBgn0018538 I 0.841
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.841
ey Drosophila persimilis FBgn0043659 I 0.841
L798_11483 Zootermopsis nevadensis L798_11483 I 0.840
NV17076 Nasonia vitripennis NV17076 I 0.835
GA27636 Drosophila pseudoobscura FBgn0249001 I 0.835
GB41504 Apis mellifera GB41504 I 0.835
GK13683 Drosophila willistoni FBgn0215691 I 0.835
GI14042 Drosophila mojavensis FBgn0136796 I 0.835
GF22818 Drosophila ananassae FBgn0099812 I 0.835
GF21877 Drosophila ananassae FBgn0098877 I 0.835
ey Drosophila virilis FBgn0028754 I 0.835
GJ13300 Drosophila virilis FBgn0200526 I 0.835
GH23963 Drosophila grimshawi FBgn0131420 I 0.835
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.835
Cflo_00481--XP_394648.3_APIME Camponotus floridanus Cflo_00481--XP_394648.3_APIME I 0.835
GL17563 Drosophila persimilis FBgn0155166 I 0.835
Hsal_09597--XP_394648.3_APIME Harpegnathos saltator Hsal_09597--XP_394648.3_APIME I 0.835
PAX6 Echinops telfairi ENSETEG00000002655 I 0.832
ENSPPYG00000003386 Pongo abelii ENSPPYG00000003386 I 0.832
GM13021 Drosophila sechellia FBgn0167952 I 0.830
GG16402 Drosophila erecta FBgn0108634 I 0.830
CGI_10027695 Crassostrea gigas CGI_10027695 I 0.830
PAX6 Equus caballus ENSECAG00000021000 I 0.830
GE14563 Drosophila yakuba FBgn0232162 I 0.830
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.830
toy Drosophila melanogaster FBgn0019650 D 0.830
GB50342 Apis mellifera GB50342 I 0.824
NV15820 Nasonia vitripennis NV15820 I 0.824
AFUN011570 Anopheles funestus AFUN011570 I 0.819
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.819
ASTEI06205 Anopheles stephensi ASTEI06205 I 0.819
AATE014626 Anopheles atroparvus AATE014626 I 0.819
ADIR000973 Anopheles dirus ADIR000973 I 0.819
ISCW021772 Ixodes scapularis ISCW021772 I 0.819
AMIN002132 Anopheles minimus AMIN002132 I 0.819
ACHR009845 Anopheles christyi ACHR009845 I 0.819
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.819
GD24416 Drosophila simulans FBgn0195753 I 0.819
ADAC001560 Anopheles darlingi ADAC001560 I 0.814
SMU15027897 Schmidtea mediterranea SMU15027897 I 0.813
BXY_1643500 Bursaphelenchus xylophilus BXY_1643500 I 0.813
AARA001115 Anopheles arabiensis AARA001115 I 0.808
AQUA008308 Anopheles quadriannulatus AQUA008308 I 0.808
AGAP000063 Anopheles gambiae AGAP000063 I 0.808
AMIN002127 Anopheles minimus AMIN002127 I 0.808
AALB006354 Anopheles albimanus AALB006354 I 0.808
HelroG80374 Helobdella robusta HelroG80374 I 0.808
ASIS012967 Anopheles sinensis ASIS012967 I 0.808
ASTEI06200 Anopheles stephensi ASTEI06200 I 0.808
AAEL002321 Aedes aegypti AAEL002321 I 0.802
AFUN011575 Anopheles funestus AFUN011575 I 0.802
AMEC021831 Anopheles melas AMEC021831 I 0.802
PHUM097050 Pediculus humanus PHUM097050 I 0.797
AFAF009619 Anopheles farauti AFAF009619 I 0.795
ADAC003449 Anopheles darlingi ADAC003449 I 0.795
EFV57892 Trichinella spiralis EFV57892 I 0.791
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.786
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.786
ASIS012617 Anopheles sinensis ASIS012617 I 0.785
D917_00854 Trichinella nativa D917_00854 I 0.780
CPIJ006390 Culex quinquefasciatus CPIJ006390 I 0.775
T265_09221 Opisthorchis viverrini T265_09221 I 0.775
CPIJ006398 Culex quinquefasciatus CPIJ006398 I 0.775
ACUA016154 Anopheles culicifacies ACUA016154 I 0.775
AALB006643 Anopheles albimanus AALB006643 I 0.775
Smp_160670 Schistosoma mansoni Smp_160670 I 0.775
CpipJ_CPIJ006398 Culex pipiens CpipJ_CPIJ006398 I 0.775
ACUA021227 Anopheles culicifacies ACUA021227 I 0.775
CpipJ_CPIJ006390 Culex pipiens CpipJ_CPIJ006390 I 0.775
PAX6 Pan troglodytes ENSPTRG00000003474 I 0.770
AEPI005798 Anopheles epiroticus AEPI005798 I 0.769
Afo_R014630 Aptenodytes forsteri Afo_R014630 I 0.769
tetur09g00660 Tetranychus urticae tetur09g00660 I 0.769
AEPI005803 Anopheles epiroticus AEPI005803 I 0.769
HelroG173449 Helobdella robusta HelroG173449 I 0.769
AGAP000067 Anopheles gambiae AGAP000067 I 0.769
AFAF017899 Anopheles farauti AFAF017899 I 0.769
AQUA008313 Anopheles quadriannulatus AQUA008313 I 0.769
AARA001110 Anopheles arabiensis AARA001110 I 0.769
AMEM002691 Anopheles merus AMEM002691 I 0.769
AMEC013051 Anopheles melas AMEC013051 I 0.769
MCINX016249 Melitaea cinxia MCINX016249 I 0.764
Smp_170750 Schistosoma mansoni Smp_170750 I 0.764
SMTD_0000837201 Schistosoma mattheei SMTD_0000837201 I 0.764
ISCW006352 Ixodes scapularis ISCW006352 I 0.764
A_05170 Schistosoma haematobium A_05170 I 0.764
T265_14971 Opisthorchis viverrini T265_14971 I 0.756
ENSTSYG00000011965 Tarsius syrichta ENSTSYG00000011965 I 0.754
csin101119 Clonorchis sinensis csin101119 I 0.752
ACHR008920 Anopheles christyi ACHR008920 I 0.742
D915_07175 Fasciola hepatica D915_07175 I 0.742
ADIR000968 Anopheles dirus ADIR000968 I 0.732
MCOS_0000220101 Mesocestoides corti MCOS_0000220101 I 0.725
csin110224 Clonorchis sinensis csin110224 I 0.725
fgenesh2_pg.scaffold_199000043 Branchiostoma floridae fgenesh2_pg.scaffold_199000043 I 0.722
NEMVEDRAFT_v1g239535 Nematostella vectensis NEMVEDRAFT_v1g239535 I 0.703