CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_199000043
(
Branchiostoma floridae
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
fgenesh2_pg.scaffold_199000043
T237733_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.826
0.826
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.826
0.826
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.826
0.826
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.826
0.826
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.826
0.826
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.826
0.826
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.826
0.826
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.826
0.826
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.826
0.826
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.826
0.826
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.826
0.826
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.826
0.826
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.826
0.826
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.826
0.826
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.826
0.826
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.819
0.819
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.819
0.819
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.819
0.819
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.819
0.819
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.819
0.819
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.819
0.819
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD
HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.757
0.757
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.757
0.757
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.757
0.757
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.736
0.736
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.736
0.736
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.736
0.736
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_199000043
Paired box
9
97
RAYRSSATDRASLQRACSSLPPRRYYETGSIRPRAIGGSKPRVATPEVVAKIAQFKRECPSIFAWEIRDRLLSEGICTNENIPSRPEVL
fgenesh2_pg.scaffold_199000043
Homeodomain
281
337
QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Branchiostoma floridae
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.840
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.840
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.840
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.840
fgenesh2_pg.scaffold_23000118
Branchiostoma floridae
fgenesh2_pg.scaffold_23000118
I
0.840
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.840
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.833
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.833
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.826
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.826
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.826
Pax6
Mus musculus
ENSMUSG00000027168
D
0.826
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.826
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.826
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.826
PAX6
Monodelphis domestica
ENSMODG00000009611
I
0.826
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.826
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.826
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.826
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.826
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.826
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.826
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.826
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.826
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.826
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.826
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.826
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.826
pax6a
Danio rerio
ENSDARG00000103379
I
0.826
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.826
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.826
pax6b
Danio rerio
ENSDARG00000045936
I
0.826
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.826
PAX6
Bos taurus
ENSBTAG00000004561
I
0.826
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.826
PAX6
Homo sapiens
ENSG00000007372
D
0.826
PAX6
Equus caballus
ENSECAG00000021000
I
0.826
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.826
PAX6
Gallus gallus
ENSGALG00000012123
I
0.826
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.826
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.826
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.826
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.819
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.819
Afo_R014630
Aptenodytes forsteri
Afo_R014630
I
0.818
ENSAPLG00000004928
Anas platyrhynchos
ENSAPLG00000004928
I
0.812
Aan_R006618
Calypte anna
Aan_R006618
I
0.812
Gfo_R001537
Geospiza fortis
Gfo_R001537
I
0.812
PAX6
Ornithorhynchus anatinus
ENSOANG00000015149
I
0.812
ENSFALG00000010839
Ficedula albicollis
ENSFALG00000010839
I
0.812
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.812
PAX6
Pan troglodytes
ENSPTRG00000003474
I
0.812
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.806
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.806
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.806
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.792
ENSTNIG00000002471
Tetraodon nigroviridis
ENSTNIG00000002471
I
0.792
Sakowv30026828m.g
Saccoglossus kowalevskii
Sakowv30026828m.g
I
0.785
ENSTSYG00000011965
Tarsius syrichta
ENSTSYG00000011965
I
0.785
ENSCING00000006503
Ciona intestinalis
ENSCING00000006503
I
0.785
SMAR013763
Strigamia maritima
SMAR013763
I
0.778
DAPPUDRAFT_249991
Daphnia pulex
DAPPUDRAFT_249991
I
0.778
HelroG80374
Helobdella robusta
HelroG80374
I
0.778
ENSCSAVG00000007987
Ciona savignyi
ENSCSAVG00000007987
I
0.778
GK13702
Drosophila willistoni
FBgn0215710
I
0.764
ISCW021772
Ixodes scapularis
ISCW021772
I
0.764
L798_00712
Zootermopsis nevadensis
L798_00712
I
0.764
TC007409
Tribolium castaneum
TC007409
I
0.764
ey
Drosophila persimilis
FBgn0043659
I
0.764
ey
Drosophila pseudoobscura
FBgn0018538
I
0.764
TC008176
Tribolium castaneum
TC008176
I
0.764
GI14081
Drosophila mojavensis
FBgn0136835
I
0.764
DAPPUDRAFT_249978
Daphnia pulex
DAPPUDRAFT_249978
I
0.757
NV15820
Nasonia vitripennis
NV15820
I
0.757
ey
Drosophila virilis
FBgn0028754
I
0.757
GE14559
Drosophila yakuba
FBgn0232158
I
0.757
GG16399
Drosophila erecta
FBgn0108631
I
0.757
ey
Drosophila melanogaster
FBgn0005558
D
0.757
ACYPI067710
Acyrthosiphon pisum
ACYPI067710
I
0.757
GB50342
Apis mellifera
GB50342
I
0.757
ey
Drosophila sechellia
FBgn0068720
I
0.757
ACYPI008177
Acyrthosiphon pisum
ACYPI008177
I
0.743
Ogr12767
Ophisaurus gracilis
Ogr12767
I
0.743
Cmyd_10016391
Chelonia mydas
Cmyd_10016391
I
0.743
ACUA021227
Anopheles culicifacies
ACUA021227
I
0.736
GE14563
Drosophila yakuba
FBgn0232162
I
0.736
AEPI005803
Anopheles epiroticus
AEPI005803
I
0.736
AFUN011575
Anopheles funestus
AFUN011575
I
0.736
AMEC021831
Anopheles melas
AMEC021831
I
0.736
GM13021
Drosophila sechellia
FBgn0167952
I
0.736
toy
Drosophila melanogaster
FBgn0019650
D
0.736
GF21877
Drosophila ananassae
FBgn0098877
I
0.736
GG16402
Drosophila erecta
FBgn0108634
I
0.736
TTRE_0000173501
Trichuris trichiura
TTRE_0000173501
I
0.729
tetur09g00660
Tetranychus urticae
tetur09g00660
I
0.729
CRE07226
Caenorhabditis remanei
CRE07226
I
0.722
AAEL002321
Aedes aegypti
AAEL002321
I
0.722
CBN04513
Caenorhabditis brenneri
CBN04513
I
0.722
RSKR_0000862000
Rhabditophanes kr3021
RSKR_0000862000
I
0.715
vab-3
Caenorhabditis elegans
WBGene00006870
I
0.715
D915_07175
Fasciola hepatica
D915_07175
I
0.708
ISCW006352
Ixodes scapularis
ISCW006352
I
0.708
SMU15027897
Schmidtea mediterranea
SMU15027897
I
0.708
L892_g3713
Steinernema scapterisci
L892_g3713
I
0.701
PHUM097050
Pediculus humanus
PHUM097050
I
0.701
HelroG173449
Helobdella robusta
HelroG173449
I
0.701
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.701