fgenesh2_pg.scaffold_23000118 (Branchiostoma floridae)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		fgenesh2_pg.scaffold_23000118 T237734_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.812 0.812
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.812 0.812
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.812 0.812
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.812 0.812
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.812 0.812
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.812 0.812
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.812 0.812
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.812 0.812
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.812 0.812
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.812 0.812
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.812 0.812
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.812 0.812
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.812 0.812
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.812 0.812
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.806 0.806
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.806 0.806
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.806 0.806
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.806 0.806
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.806 0.806
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.806 0.806
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.806 0.806
ey
M03896_2.00 		Drosophila melanogaster
CKAATTAD
HTAATTMG		 SELEX
Nitta et al.(2015)
ey_1 		0.743 0.743
ey
M03897_2.00 		Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD		 SELEX
Nitta et al.(2015)
ey_2 		0.743 0.743
ey
M03898_2.00 		Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW		 SELEX
Nitta et al.(2015)
ey_3 		0.743 0.743
toy
M03899_2.00 		Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA		 SELEX
Nitta et al.(2015)
toy_1 		0.722 0.722
toy
M03900_2.00 		Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN		 SELEX
Nitta et al.(2015)
toy_2 		0.722 0.722
toy
M03901_2.00 		Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB		 SELEX
Nitta et al.(2015)
toy_3 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_23000118 Paired box 295 381
fgenesh2_pg.scaffold_23000118 Homeodomain 749 805

Links

Other Homeodomain,Paired box family TFs
Other Branchiostoma floridae TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.scaffold_199000043 Branchiostoma floridae fgenesh2_pg.scaffold_199000043 I 0.840
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.826
pax6b Oryzias latipes ENSORLG00000009913 I 0.826
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.826
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.826
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.826
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.819
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.819
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.812
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.812
pax6b Danio rerio ENSDARG00000045936 I 0.812
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.812
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.812
PAX6 Homo sapiens ENSG00000007372 D 0.812
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.812
pax6a Danio rerio ENSDARG00000103379 I 0.812
pax6.L Xenopus laevis XB-GENE-865046 I 0.806
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.806
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.806
ENSFALG00000010839 Ficedula albicollis ENSFALG00000010839 I 0.799
PAX6 Ornithorhynchus anatinus ENSOANG00000015149 I 0.799
Aan_R006618 Calypte anna Aan_R006618 I 0.799
pax6.S Xenopus laevis XB-GENE-6464331 I 0.799
Gfo_R001537 Geospiza fortis Gfo_R001537 I 0.799
ENSAPLG00000004928 Anas platyrhynchos ENSAPLG00000004928 I 0.799
Afo_R014630 Aptenodytes forsteri Afo_R014630 I 0.797
ENSTSYG00000011965 Tarsius syrichta ENSTSYG00000011965 I 0.797
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.792
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.792
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.792
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.778
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.778
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.771
Sakowv30026828m.g Saccoglossus kowalevskii Sakowv30026828m.g I 0.771
SMAR013763 Strigamia maritima SMAR013763 I 0.764
PAX6 Pan troglodytes ENSPTRG00000003474 I 0.757
L798_00712 Zootermopsis nevadensis L798_00712 I 0.750
TC008176 Tribolium castaneum TC008176 I 0.750
ISCW021772 Ixodes scapularis ISCW021772 I 0.750
TC007409 Tribolium castaneum TC007409 I 0.750
ey Drosophila melanogaster FBgn0005558 D 0.743
GG16399 Drosophila erecta FBgn0108631 I 0.743
ey Drosophila virilis FBgn0028754 I 0.743
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.743
GE14559 Drosophila yakuba FBgn0232158 I 0.743
ey Drosophila sechellia FBgn0068720 I 0.743
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.729
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.729
toy Drosophila melanogaster FBgn0019650 D 0.722
GG16402 Drosophila erecta FBgn0108634 I 0.722
GM13021 Drosophila sechellia FBgn0167952 I 0.722
GF21877 Drosophila ananassae FBgn0098877 I 0.722
GE14563 Drosophila yakuba FBgn0232162 I 0.722
TTRE_0000173501 Trichuris trichiura TTRE_0000173501 I 0.715
ACUA021227 Anopheles culicifacies ACUA021227 I 0.715
AAEL002321 Aedes aegypti AAEL002321 I 0.708
tetur09g00660 Tetranychus urticae tetur09g00660 I 0.708
RSKR_0000862000 Rhabditophanes kr3021 RSKR_0000862000 I 0.701