fgenesh2_pg.scaffold_23000118 (Branchiostoma floridae)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
fgenesh2_pg.scaffold_23000118 T237734_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.812 0.812
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.812 0.812
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.812 0.812
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.812 0.812
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.812 0.812
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.812 0.812
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.812 0.812
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.812 0.812
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.812 0.812
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.812 0.812
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.812 0.812
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.812 0.812
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.812 0.812
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.812 0.812
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.806 0.806
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.806 0.806
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.806 0.806
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.806 0.806
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.806 0.806
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.806 0.806
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.806 0.806
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.743 0.743
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.743 0.743
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.743 0.743
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.722 0.722
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.722 0.722
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_23000118 Paired box 295 381
fgenesh2_pg.scaffold_23000118 Homeodomain 749 805

Links

Other Homeodomain,Paired box family TFs
Other Branchiostoma floridae TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004381 Calypte anna Aan_R004381 I 0.000
Afo_R016063 Aptenodytes forsteri Afo_R016063 I 0.000
GLIS3 Anolis carolinensis ENSACAG00000003374 I 0.000
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I 0.000
ENSAMXG00000019181 Astyanax mexicanus ENSAMXG00000019181 I 0.000
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I 0.000
GLIS3 Canis familiaris ENSCAFG00000031499 I 0.000
GLIS3 Callithrix jacchus ENSCJAG00000011083 I 0.000
GLIS3 Cavia porcellus ENSCPOG00000005523 I 0.000
GLIS1 Cavia porcellus ENSCPOG00000009497 I 0.000
glis1b Danio rerio ENSDARG00000027933 I 0.000
glis1a Danio rerio ENSDARG00000068580 I 0.000
GLIS3 Equus caballus ENSECAG00000020544 I 0.000
GLIS3 Echinops telfairi ENSETEG00000015977 I 0.000
GLIS3 Homo sapiens ENSG00000107249 D 0.000
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I 0.000
GLIS3 Gallus gallus ENSGALG00000010180 I 0.000
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I 0.000
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I 0.000
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I 0.000
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I 0.000
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I 0.000
GLIS3 Monodelphis domestica ENSMODG00000015403 I 0.000
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I 0.000
Glis3 Mus musculus ENSMUSG00000052942 I 0.000
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I 0.000
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I 0.000
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I 0.000
GLIS3 Otolemur garnettii ENSOGAG00000007376 I 0.000
ENSONIG00000014033 Oreochromis niloticus ENSONIG00000014033 I 0.000
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I 0.000
ENSORLG00000007755 Oryzias latipes ENSORLG00000007755 I 0.000
ENSP00000371398 Macaca fascicularis ENSP00000371398 I 0.000
ENSP00000384734-D2 Bos grunniens ENSP00000384734-D2 I 0.000
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I 0.000
GLIS3 Procavia capensis ENSPCAG00000004139 I 0.000
ENSPFOG00000002618 Poecilia formosa ENSPFOG00000002618 I 0.000
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I 0.000
ENSPFOG00000019805 Poecilia formosa ENSPFOG00000019805 I 0.000
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I 0.000
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I 0.000
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I 0.000
Glis3 Rattus norvegicus ENSRNOG00000014768 I 0.000
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I 0.000
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I 0.000
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I 0.000
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I 0.000
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I 0.000
GLIS3 Vicugna pacos ENSVPAG00000005473 I 0.000
ENSXMAG00000005013 Xiphophorus maculatus ENSXMAG00000005013 I 0.000
ENSXMAG00000005337 Xiphophorus maculatus ENSXMAG00000005337 I 0.000
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I 0.000
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I 0.000
Gfo_R012286 Geospiza fortis Gfo_R012286 I 0.000
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I 0.000
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I 0.000
Ogr17806 Ophisaurus gracilis Ogr17806 I 0.000
Pvit_10484 Pogona vitticeps Pvit_10484 I 0.000
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I 0.000
SMAR005079 Strigamia maritima SMAR005079 I 0.000
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I 0.000
glis3 Xenopus tropicalis XB-GENE-984727 I 0.000