CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MESCA003564
(
Megaselia scalaris
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
MESCA003564
T237645_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.830
0.830
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.830
0.830
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.830
0.830
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.758
0.758
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.758
0.758
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.758
0.758
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD
HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.758
0.758
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.758
0.758
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.758
0.758
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.758
0.758
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.758
0.758
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.758
0.758
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.758
0.758
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.758
0.758
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.758
0.758
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.758
0.758
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.758
0.758
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.758
0.758
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.753
0.753
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.753
0.753
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.753
0.753
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.753
0.753
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.753
0.753
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.753
0.753
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.753
0.753
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.753
0.753
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.753
0.753
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MESCA003564-PA
Paired box
24
151
GHSGINQLGGVYVNGRPLPDSTRQKIVELAHSEQDRATFQEFYKFQMDVLVKYWEGIFIYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINRVLR
MESCA003564-PA
Homeodomain
270
331
QRNRTSFTNEQIDNLEKEFERTHYPDVFARERLAEKIGLPRHVFRIRYLYVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Megaselia scalaris
TFs
131 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GL17563
Drosophila persimilis
FBgn0155166
I
0.841
GJ13300
Drosophila virilis
FBgn0200526
I
0.841
GK13683
Drosophila willistoni
FBgn0215691
I
0.841
GI14042
Drosophila mojavensis
FBgn0136796
I
0.841
GH23963
Drosophila grimshawi
FBgn0131420
I
0.841
GA27636
Drosophila pseudoobscura
FBgn0249001
I
0.841
toy
Drosophila melanogaster
FBgn0019650
D
0.830
GF21877
Drosophila ananassae
FBgn0098877
I
0.830
GM13021
Drosophila sechellia
FBgn0167952
I
0.830
GG16402
Drosophila erecta
FBgn0108634
I
0.830
GE14563
Drosophila yakuba
FBgn0232162
I
0.830
Cflo_00481--XP_394648.3_APIME
Camponotus floridanus
Cflo_00481--XP_394648.3_APIME
I
0.808
NV17076
Nasonia vitripennis
NV17076
I
0.808
GB41504
Apis mellifera
GB41504
I
0.808
L798_00712
Zootermopsis nevadensis
L798_00712
I
0.808
Hsal_09597--XP_394648.3_APIME
Harpegnathos saltator
Hsal_09597--XP_394648.3_APIME
I
0.808
TC007409
Tribolium castaneum
TC007409
I
0.808
DAPPUDRAFT_249978
Daphnia pulex
DAPPUDRAFT_249978
I
0.797
SMAR013763
Strigamia maritima
SMAR013763
I
0.786
ACYPI008177
Acyrthosiphon pisum
ACYPI008177
I
0.786
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.769
GD24416
Drosophila simulans
FBgn0195753
I
0.769
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.764
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.764
PHUM097050
Pediculus humanus
PHUM097050
I
0.764
PAX6
Felis catus
ENSFCAG00000007094
I
0.764
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.764
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.764
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.764
GF22818
Drosophila ananassae
FBgn0099812
I
0.764
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.764
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.764
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.764
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.764
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.764
pax6a
Danio rerio
ENSDARG00000103379
I
0.764
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.764
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.764
L798_11483
Zootermopsis nevadensis
L798_11483
I
0.762
ey
Drosophila melanogaster
FBgn0005558
D
0.758
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.758
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.758
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.758
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.758
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.758
Sakowv30026828m.g
Saccoglossus kowalevskii
Sakowv30026828m.g
I
0.758
TC008176
Tribolium castaneum
TC008176
I
0.758
GK13702
Drosophila willistoni
FBgn0215710
I
0.758
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.758
GI14081
Drosophila mojavensis
FBgn0136835
I
0.758
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.758
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.758
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.758
ey
Drosophila persimilis
FBgn0043659
I
0.758
ey
Drosophila pseudoobscura
FBgn0018538
I
0.758
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.758
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.758
PAX6
Gallus gallus
ENSGALG00000012123
I
0.758
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.758
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.758
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.758
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.758
PAX6
Homo sapiens
ENSG00000007372
D
0.758
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.758
ACYPI067710
Acyrthosiphon pisum
ACYPI067710
I
0.758
PAX6
Bos taurus
ENSBTAG00000004561
I
0.758
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.758
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.758
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.758
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.758
pax6b
Danio rerio
ENSDARG00000045936
I
0.758
Pax6
Mus musculus
ENSMUSG00000027168
D
0.758
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.758
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.758
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.758
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.758
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.758
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.758
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.753
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.753
GB50342
Apis mellifera
GB50342
I
0.753
GG16399
Drosophila erecta
FBgn0108631
I
0.753
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.753
NV15820
Nasonia vitripennis
NV15820
I
0.753
GE14559
Drosophila yakuba
FBgn0232158
I
0.753
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.753
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.753
ey
Drosophila virilis
FBgn0028754
I
0.753
ENSAMXG00000013008
Astyanax mexicanus
ENSAMXG00000013008
I
0.753
ey
Drosophila sechellia
FBgn0068720
I
0.753
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.747
D918_01592
Trichuris suis
D918_01592
I
0.747
ENSGMOG00000019087
Gadus morhua
ENSGMOG00000019087
I
0.747
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.747
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.747
PAX6
Sorex araneus
ENSSARG00000011424
I
0.746
TMUE_s0038005250
Trichuris muris
TMUE_s0038005250
I
0.742
DAPPUDRAFT_249991
Daphnia pulex
DAPPUDRAFT_249991
I
0.742
TTRE_0000173501
Trichuris trichiura
TTRE_0000173501
I
0.742
ENSTRUG00000017375
Takifugu rubripes
ENSTRUG00000017375
I
0.742
ENSTNIG00000002471
Tetraodon nigroviridis
ENSTNIG00000002471
I
0.736
PAX6
Equus caballus
ENSECAG00000021000
I
0.736
SMU15027897
Schmidtea mediterranea
SMU15027897
I
0.731
CGI_10027695
Crassostrea gigas
CGI_10027695
I
0.731
ASIS012617
Anopheles sinensis
ASIS012617
I
0.725
MCINX016249
Melitaea cinxia
MCINX016249
I
0.725
LotgiG133720
Lottia gigantea
LotgiG133720
I
0.725
PAX6
Monodelphis domestica
ENSMODG00000009611
I
0.725
ACUA016154
Anopheles culicifacies
ACUA016154
I
0.720
AALB006643
Anopheles albimanus
AALB006643
I
0.720
ISCW021772
Ixodes scapularis
ISCW021772
I
0.720
ENSCSAVG00000007987
Ciona savignyi
ENSCSAVG00000007987
I
0.720
ENSCING00000006503
Ciona intestinalis
ENSCING00000006503
I
0.720
AMIN002132
Anopheles minimus
AMIN002132
I
0.714
AMEM002691
Anopheles merus
AMEM002691
I
0.714
AQUA008313
Anopheles quadriannulatus
AQUA008313
I
0.714
CpipJ_CPIJ006398
Culex pipiens
CpipJ_CPIJ006398
I
0.714
AMEC013051
Anopheles melas
AMEC013051
I
0.714
ASTEI06205
Anopheles stephensi
ASTEI06205
I
0.714
AFAF017899
Anopheles farauti
AFAF017899
I
0.714
AFUN011570
Anopheles funestus
AFUN011570
I
0.714
AARA001110
Anopheles arabiensis
AARA001110
I
0.714
AGAP000067
Anopheles gambiae
AGAP000067
I
0.714
ACHR009845
Anopheles christyi
ACHR009845
I
0.714
AATE014626
Anopheles atroparvus
AATE014626
I
0.714
ADIR000973
Anopheles dirus
ADIR000973
I
0.714
AEPI005798
Anopheles epiroticus
AEPI005798
I
0.714
CPIJ006398
Culex quinquefasciatus
CPIJ006398
I
0.714
Afo_R014630
Aptenodytes forsteri
Afo_R014630
I
0.713
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.703
L892_g3713
Steinernema scapterisci
L892_g3713
I
0.703