NEMVEDRAFT_v1g168908 (Nematostella vectensis)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		NEMVEDRAFT_v1g168908 T237646_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.731 0.731
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.731 0.731
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.731 0.731
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.731 0.731
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.731 0.731
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.731 0.731
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.731 0.731
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.731 0.731
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.731 0.731
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.731 0.731
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.731 0.731
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.731 0.731
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.731 0.731
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.731 0.731
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.731 0.731
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.725 0.725
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.725 0.725
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.725 0.725
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.725 0.725
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.725 0.725
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.725 0.725
ey
M03896_2.00 		Drosophila melanogaster
CKAATTAD
HTAATTMG		 SELEX
Nitta et al.(2015)
ey_1 		0.714 0.714
ey
M03897_2.00 		Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD		 SELEX
Nitta et al.(2015)
ey_2 		0.714 0.714
ey
M03898_2.00 		Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW		 SELEX
Nitta et al.(2015)
ey_3 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO38660 Paired box 22 146
EDO38660 Homeodomain 330 386

Links

Other Homeodomain,Paired box family TFs
Other Nematostella vectensis TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30011253m.g Saccoglossus kowalevskii Sakowv30011253m.g I 0.764
SINV20456 Solenopsis invicta SINV20456 I 0.752
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.747
Hsal_03768--XP_394294.2_APIME Harpegnathos saltator Hsal_03768--XP_394294.2_APIME I 0.746
pax6b Oryzias latipes ENSORLG00000009913 I 0.742
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.742
ENSTRUG00000017375 Takifugu rubripes ENSTRUG00000017375 I 0.742
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.742
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.742
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.742
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.742
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.736
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.736
NEMVEDRAFT_v1g239535 Nematostella vectensis NEMVEDRAFT_v1g239535 I 0.736
pax6a Danio rerio ENSDARG00000103379 I 0.736
PAX6 Felis catus ENSFCAG00000007094 I 0.736
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.736
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.736
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.736
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.736
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.736
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.736
ENSAMXG00000013008 Astyanax mexicanus ENSAMXG00000013008 I 0.736
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.736
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.736
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.736
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.736
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.736
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.736
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.736
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.736
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.736
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.731
PAX6 Procavia capensis ENSPCAG00000005165 I 0.731
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.731
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.731
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.731
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.731
PAX6 Microcebus murinus ENSMICG00000004089 I 0.731
PAX6 Sus scrofa ENSSSCG00000013320 I 0.731
Pax6 Mus musculus ENSMUSG00000027168 D 0.731
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.731
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.731
PAX6 Homo sapiens ENSG00000007372 D 0.731
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.731
pax6 Xenopus tropicalis XB-GENE-484088 I 0.731
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.731
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.731
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.731
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.731
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.731
Sakowv30026828m.g Saccoglossus kowalevskii Sakowv30026828m.g I 0.731
pax6b Danio rerio ENSDARG00000045936 I 0.731
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.731
PAX6 Gallus gallus ENSGALG00000012123 I 0.731
pax6.L Xenopus laevis XB-GENE-865046 I 0.731
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.731
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.731
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.731
PAX6 Bos taurus ENSBTAG00000004561 I 0.731
pax6.S Xenopus laevis XB-GENE-6464331 I 0.731
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.731
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.725
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 0.724
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 0.724
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 0.724
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.724
PAX2 Sus scrofa ENSSSCG00000010556 I 0.724
PAX2 Tursiops truncatus ENSTTRG00000015106 I 0.724
PAX2 Pan troglodytes ENSPTRG00000002853 I 0.724
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 0.724
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 0.724
PAX2 Procavia capensis ENSPCAG00000006623 I 0.724
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 0.724
PAX2 Felis catus ENSFCAG00000011602 I 0.724
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 0.724
PAX2 Homo sapiens ENSG00000075891 D 0.724
PAX2 Gorilla gorilla ENSGGOG00000014908 I 0.724
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.724
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 0.724
PAX2 Cavia porcellus ENSCPOG00000000939 I 0.724
PAX2 Ochotona princeps ENSOPRG00000007096 I 0.724
PAX2 Callithrix jacchus ENSCJAG00000017397 I 0.724
PAX2 Canis familiaris ENSCAFG00000009709 I 0.724
PAX2 Bos taurus ENSBTAG00000021566 I 0.724
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 0.724
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.724
PAX2 Equus caballus ENSECAG00000021123 I 0.724
PAX2 Macaca mulatta ENSMMUG00000009163 I 0.724
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.724
PAX2 Microcebus murinus ENSMICG00000001357 I 0.724
Pax2 Mus musculus ENSMUSG00000004231 D 0.724
PAX2 Otolemur garnettii ENSOGAG00000015274 I 0.724
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 0.724
PAX6 Sorex araneus ENSSARG00000011424 I 0.723
ACYPI067710 Acyrthosiphon pisum ACYPI067710 I 0.720
CGI_10027695 Crassostrea gigas CGI_10027695 I 0.720
TriadG3502 Trichoplax adhaerens TriadG3502 N 0.720
ENSGMOG00000019087 Gadus morhua ENSGMOG00000019087 I 0.720
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.720
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.719
CAA71206 Xenopus laevis CAA71206 I 0.718
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.718
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 0.718
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.718
AGAP000063 Anopheles gambiae AGAP000063 I 0.714
ASTEI06200 Anopheles stephensi ASTEI06200 I 0.714
SMU15027897 Schmidtea mediterranea SMU15027897 I 0.714
ey Drosophila melanogaster FBgn0005558 D 0.714
AMIN002127 Anopheles minimus AMIN002127 I 0.714
AARA001115 Anopheles arabiensis AARA001115 I 0.714
PAX6 Equus caballus ENSECAG00000021000 I 0.714
AQUA008308 Anopheles quadriannulatus AQUA008308 I 0.714
ASIS012967 Anopheles sinensis ASIS012967 I 0.714
TC008176 Tribolium castaneum TC008176 I 0.714
L798_11483 Zootermopsis nevadensis L798_11483 I 0.713
NV12005 Nasonia vitripennis NV12005 I 0.713
tetur01g15740 Tetranychus urticae tetur01g15740 I 0.713
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.712
pax2.L Xenopus laevis XB-GENE-486805 I 0.712
PAX6 Echinops telfairi ENSETEG00000002655 I 0.711
ENSVPAG00000012251 Vicugna pacos ENSVPAG00000012251 I 0.710
PAX7 Choloepus hoffmanni ENSCHOG00000005130 I 0.710
Cflo_00481--XP_394648.3_APIME Camponotus floridanus Cflo_00481--XP_394648.3_APIME I 0.709
AMEC021831 Anopheles melas AMEC021831 I 0.709
AFUN011575 Anopheles funestus AFUN011575 I 0.709
TC007409 Tribolium castaneum TC007409 I 0.709
AALB006354 Anopheles albimanus AALB006354 I 0.709
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.709
DAPPUDRAFT_249991 Daphnia pulex DAPPUDRAFT_249991 I 0.709
CGI_10026438 Crassostrea gigas CGI_10026438 I 0.709
Hsal_09597--XP_394648.3_APIME Harpegnathos saltator Hsal_09597--XP_394648.3_APIME I 0.709
HelroG80374 Helobdella robusta HelroG80374 I 0.709
GB41504 Apis mellifera GB41504 I 0.709
L798_00712 Zootermopsis nevadensis L798_00712 I 0.709
GE14559 Drosophila yakuba FBgn0232158 I 0.709
ey Drosophila sechellia FBgn0068720 I 0.709
GG16399 Drosophila erecta FBgn0108631 I 0.709
Smp_170750 Schistosoma mansoni Smp_170750 I 0.709
LotgiG133720 Lottia gigantea LotgiG133720 I 0.709
ey Drosophila virilis FBgn0028754 I 0.709
AAEL002321 Aedes aegypti AAEL002321 I 0.709
NV17076 Nasonia vitripennis NV17076 I 0.709
SMAR013763 Strigamia maritima SMAR013763 I 0.709
ENSPPYG00000003386 Pongo abelii ENSPPYG00000003386 I 0.707
AFAF005899 Anopheles farauti AFAF005899 I 0.704
GF22818 Drosophila ananassae FBgn0099812 I 0.703
GH23963 Drosophila grimshawi FBgn0131420 I 0.703
GF21877 Drosophila ananassae FBgn0098877 I 0.703
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.703
ey Drosophila persimilis FBgn0043659 I 0.703
ey Drosophila pseudoobscura FBgn0018538 I 0.703
GK13683 Drosophila willistoni FBgn0215691 I 0.703
GB50342 Apis mellifera GB50342 I 0.703
NV15820 Nasonia vitripennis NV15820 I 0.703
tetur29g00530 Tetranychus urticae tetur29g00530 I 0.703
Smp_160670 Schistosoma mansoni Smp_160670 I 0.703
GA27636 Drosophila pseudoobscura FBgn0249001 I 0.703
GK13702 Drosophila willistoni FBgn0215710 I 0.703
GL17563 Drosophila persimilis FBgn0155166 I 0.703
GJ13300 Drosophila virilis FBgn0200526 I 0.703
GI14042 Drosophila mojavensis FBgn0136796 I 0.703
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.703
GI14081 Drosophila mojavensis FBgn0136835 I 0.703
MCINX015151 Melitaea cinxia MCINX015151 I 0.701