CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hsal_03768--XP_394294.2_APIME
(
Harpegnathos saltator
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Hsal_03768--XP_394294.2_APIME
T237714_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
eyg
M03887_2.00
Drosophila melanogaster
NDTAATCGATTAHN
NDTAATCGATTAHN
SELEX
Nitta et al.(2015)
eyg_1
0.905
0.905
toe
M03902_2.00
Drosophila melanogaster
NTAATYGATTAN
NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_1
0.841
0.841
toe
M03903_2.00
Drosophila melanogaster
NTAATYGATTAN
NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_2
0.841
0.841
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.714
0.714
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.714
0.714
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.714
0.714
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.714
0.714
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.714
0.714
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.714
0.714
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.714
0.714
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.714
0.714
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.714
0.714
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.714
0.714
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.714
0.714
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.714
0.714
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.714
0.714
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.714
0.714
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.706
0.706
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.706
0.706
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.706
0.706
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.706
0.706
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.706
0.706
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.706
0.706
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Hsal_03768--XP_394294.2_APIME
Paired box
16
85
SDVPGTLRPPGLIGGSKPKVATPAVVAKIEQYKRENPTIFAWEIRERLISEGVCSNATAPSVSSINRILR
Hsal_03768--XP_394294.2_APIME
Homeodomain
103
159
RRNRTTFSPEQLEELEKEFERSHYPCVSTRERLASKTSLSEARVQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Harpegnathos saltator
TFs
94 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SINV20456
Solenopsis invicta
SINV20456
I
0.984
GB55405
Apis mellifera
GB55405
I
0.968
NV12005
Nasonia vitripennis
NV12005
I
0.929
GE20121
Drosophila yakuba
FBgn0237444
I
0.905
KGM_15291
Danaus plexippus
KGM_15291
I
0.905
GK12628
Drosophila willistoni
FBgn0214637
I
0.905
GM24656
Drosophila sechellia
FBgn0179519
I
0.905
eyg
Drosophila melanogaster
FBgn0000625
D
0.905
GF24979
Drosophila ananassae
FBgn0101971
I
0.905
GG13831
Drosophila erecta
FBgn0106094
I
0.905
TC007194
Tribolium castaneum
TC007194
I
0.905
PHUM427950
Pediculus humanus
PHUM427950
I
0.905
MDOA004637
Musca domestica
MDOA004637
I
0.897
LCUP004289
Lucilia cuprina
LCUP004289
I
0.897
AGAP011417
Anopheles gambiae
AGAP011417
I
0.897
LCUP004290
Lucilia cuprina
LCUP004290
I
0.881
MDOA006963
Musca domestica
MDOA006963
I
0.873
AATE019032
Anopheles atroparvus
AATE019032
I
0.870
GA23573
Drosophila pseudoobscura
FBgn0244973
I
0.865
GH16065
Drosophila grimshawi
FBgn0123536
I
0.857
ACYPI53909
Acyrthosiphon pisum
ACYPI53909
I
0.857
GF24980
Drosophila ananassae
FBgn0101972
I
0.857
GI12329
Drosophila mojavensis
FBgn0135086
I
0.849
toe
Drosophila melanogaster
FBgn0036285
D
0.841
GD12721
Drosophila simulans
FBgn0184448
I
0.841
GM24657
Drosophila sechellia
FBgn0179520
I
0.841
AMAM022755
Anopheles maculatus
AMAM022755
I
0.809
Sakowv30011253m.g
Saccoglossus kowalevskii
Sakowv30011253m.g
I
0.786
tetur01g15740
Tetranychus urticae
tetur01g15740
I
0.778
LLOJ009256
Lutzomyia longipalpis
LLOJ009256
I
0.762
NEMVEDRAFT_v1g168908
Nematostella vectensis
NEMVEDRAFT_v1g168908
I
0.746
TriadG3502
Trichoplax adhaerens
TriadG3502
N
0.722
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.714
Gfo_R001537
Geospiza fortis
Gfo_R001537
I
0.714
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.714
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.714
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.714
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.714
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.714
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.714
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.714
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.714
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.714
Aan_R006618
Calypte anna
Aan_R006618
I
0.714
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.714
PAX6
Gallus gallus
ENSGALG00000012123
I
0.714
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.714
PAX6
Homo sapiens
ENSG00000007372
D
0.714
PAX6
Felis catus
ENSFCAG00000007094
I
0.714
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.714
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.714
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.714
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.714
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.714
ENSFALG00000010839
Ficedula albicollis
ENSFALG00000010839
I
0.714
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.714
PAX6
Bos taurus
ENSBTAG00000004561
I
0.714
ENSAPLG00000004928
Anas platyrhynchos
ENSAPLG00000004928
I
0.714
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.714
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.714
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.714
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.714
pax6a
Danio rerio
ENSDARG00000103379
I
0.714
pax6b
Danio rerio
ENSDARG00000045936
I
0.714
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.714
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.714
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.714
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.714
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.714
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.714
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.714
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.714
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.714
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.714
PAX6
Pan troglodytes
ENSPTRG00000003474
I
0.714
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.714
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.714
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.714
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.714
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.714
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.714
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.714
Pax6
Mus musculus
ENSMUSG00000027168
D
0.714
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.714
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.714
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.706
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.706
L892_g3713
Steinernema scapterisci
L892_g3713
I
0.706
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.706
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.706
tetur29g00530
Tetranychus urticae
tetur29g00530
I
0.706
GA10346
Drosophila pseudoobscura
FBgn0070404
I
0.704
GL24956
Drosophila persimilis
FBgn0162543
I
0.704
ACEP19922
Atta cephalotes
ACEP19922
I
0.701