Sakowv30011253m.g (Saccoglossus kowalevskii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Sakowv30011253m.g T237735_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.702 0.702
eyg
M03887_2.00
Drosophila melanogaster
NDTAATCGATTAHN

NDTAATCGATTAHN
SELEX
Nitta et al.(2015)
eyg_1
0.821 0.821
toe
M03902_2.00
Drosophila melanogaster
NTAATYGATTAN

NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_1
0.821 0.821
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.702 0.702
toe
M03903_2.00
Drosophila melanogaster
NTAATYGATTAN

NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_2
0.821 0.821
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.702 0.702
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.702 0.702
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.702 0.702
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.702 0.702
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.702 0.702
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.702 0.702
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.702 0.702
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.702 0.702
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.702 0.702
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.702 0.702
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.702 0.702
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.702 0.702
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.702 0.702
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.707 0.707
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.707 0.707
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.707 0.707
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.707 0.707
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.707 0.707
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.707 0.707
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.707 0.707
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.707 0.707
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23927549_peptide Paired box 9 134
23927549_peptide Homeodomain 239 295
23927550_peptide Paired box 9 134
23927550_peptide Homeodomain 239 291
23927551_peptide Paired box 9 133
23927551_peptide Homeodomain 238 290
23927552_peptide Paired box 1 66
23927552_peptide Homeodomain 171 227

Links

Other Homeodomain,Paired box family TFs
Other Saccoglossus kowalevskii TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI53909 Acyrthosiphon pisum ACYPI53909 I 0.829
GM24657 Drosophila sechellia FBgn0179520 I 0.821
GM24656 Drosophila sechellia FBgn0179519 I 0.821
toe Drosophila melanogaster FBgn0036285 D 0.821
GD12721 Drosophila simulans FBgn0184448 I 0.821
GH16065 Drosophila grimshawi FBgn0123536 I 0.821
KGM_15291 Danaus plexippus KGM_15291 I 0.821
TC007194 Tribolium castaneum TC007194 I 0.821
PHUM427950 Pediculus humanus PHUM427950 I 0.821
eyg Drosophila melanogaster FBgn0000625 D 0.821
GK12628 Drosophila willistoni FBgn0214637 I 0.821
GF24979 Drosophila ananassae FBgn0101971 I 0.821
MDOA004637 Musca domestica MDOA004637 I 0.813
GI12329 Drosophila mojavensis FBgn0135086 I 0.813
GA23573 Drosophila pseudoobscura FBgn0244973 I 0.813
MDOA006963 Musca domestica MDOA006963 I 0.813
LCUP004289 Lucilia cuprina LCUP004289 I 0.813
GB55405 Apis mellifera GB55405 I 0.805
LCUP004290 Lucilia cuprina LCUP004290 I 0.805
GF24980 Drosophila ananassae FBgn0101972 I 0.805
SINV20456 Solenopsis invicta SINV20456 I 0.792
Hsal_03768--XP_394294.2_APIME Harpegnathos saltator Hsal_03768--XP_394294.2_APIME I 0.786
AFAF005899 Anopheles farauti AFAF005899 I 0.775
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.764
tetur01g15740 Tetranychus urticae tetur01g15740 I 0.754
NV12005 Nasonia vitripennis NV12005 I 0.750
AATE019032 Anopheles atroparvus AATE019032 I 0.748
MCINX015151 Melitaea cinxia MCINX015151 I 0.747
TriadG3502 Trichoplax adhaerens TriadG3502 N 0.732
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.724
GL24956 Drosophila persimilis FBgn0162543 I 0.716
GA10346 Drosophila pseudoobscura FBgn0070404 I 0.716
PAX6 Homo sapiens ENSG00000007372 D 0.715
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.715
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.715
ENSFALG00000010839 Ficedula albicollis ENSFALG00000010839 I 0.715
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.715
Aan_R006618 Calypte anna Aan_R006618 I 0.715
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.715
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.715
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.715
PAX6 Microcebus murinus ENSMICG00000004089 I 0.715
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.715
ENSAPLG00000004928 Anas platyrhynchos ENSAPLG00000004928 I 0.715
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.715
Gfo_R001537 Geospiza fortis Gfo_R001537 I 0.715
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.715
PAX6 Bos taurus ENSBTAG00000004561 I 0.715
TC008176 Tribolium castaneum TC008176 I 0.715
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.715
PAX6 Sus scrofa ENSSSCG00000013320 I 0.715
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.715
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.715
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.715
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.715
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.715
PAX6 Procavia capensis ENSPCAG00000005165 I 0.715
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.715
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.715
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.715
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.715
pax6 Xenopus tropicalis XB-GENE-484088 I 0.715
Pax6 Mus musculus ENSMUSG00000027168 D 0.715
PAX6 Gallus gallus ENSGALG00000012123 I 0.715
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.715
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.715
AMAM022755 Anopheles maculatus AMAM022755 I 0.713
GI12327 Drosophila mojavensis FBgn0135084 I 0.712
GJ13265 Drosophila virilis FBgn0200491 I 0.712
GH16064 Drosophila grimshawi FBgn0123535 I 0.712
GG13831 Drosophila erecta FBgn0106094 I 0.711
GE20121 Drosophila yakuba FBgn0237444 I 0.711
CGI_10020873 Crassostrea gigas CGI_10020873 N 0.709
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.708
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.708
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.708
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.708
GD12719 Drosophila simulans FBgn0184446 I 0.708
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.708
GB50342 Apis mellifera GB50342 I 0.708
PAX6 Felis catus ENSFCAG00000007094 I 0.708
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.708
NV15820 Nasonia vitripennis NV15820 I 0.708
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.708
pax6b Danio rerio ENSDARG00000045936 I 0.707
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.707
ey Drosophila melanogaster FBgn0005558 D 0.707
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.707
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.707
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.707
ey Drosophila virilis FBgn0028754 I 0.707
pax6a Danio rerio ENSDARG00000103379 I 0.707
GE14559 Drosophila yakuba FBgn0232158 I 0.707
GG16399 Drosophila erecta FBgn0108631 I 0.707
ACYPI067710 Acyrthosiphon pisum ACYPI067710 I 0.707
ey Drosophila sechellia FBgn0068720 I 0.707
GG13832 Drosophila erecta FBgn0106095 I 0.704
GE20122 Drosophila yakuba FBgn0237445 I 0.704
HMEL010417 Heliconius melpomene HMEL010417 I 0.703
SMU15027897 Schmidtea mediterranea SMU15027897 I 0.703