CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30011253m.g
(
Saccoglossus kowalevskii
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Sakowv30011253m.g
T237735_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
eyg
M03887_2.00
Drosophila melanogaster
NDTAATCGATTAHN
NDTAATCGATTAHN
SELEX
Nitta et al.(2015)
eyg_1
0.821
0.821
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.702
0.702
toe
M03902_2.00
Drosophila melanogaster
NTAATYGATTAN
NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_1
0.821
0.821
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.702
0.702
toe
M03903_2.00
Drosophila melanogaster
NTAATYGATTAN
NTAATCRATTAN
SELEX
Nitta et al.(2015)
toe_2
0.821
0.821
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.702
0.702
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.702
0.702
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.702
0.702
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.702
0.702
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.702
0.702
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.702
0.702
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.702
0.702
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.702
0.702
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.702
0.702
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.702
0.702
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.702
0.702
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.702
0.702
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.702
0.702
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD
HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.707
0.707
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.707
0.707
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.707
0.707
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.707
0.707
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.707
0.707
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.707
0.707
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.707
0.707
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.707
0.707
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23927549_peptide
Paired box
9
134
GLNGLPQLGGMFLNGRPLPDPLRHRIVELAHCGIRPCDISRQLLISHGSVSKMLAGRYYEMGAIRPGTIGGSKPKVATPEVVSKIELYKQENPTIFAWEIRDRLISEGVCTNSTVPSVSSINRILR
23927549_peptide
Homeodomain
239
295
RRSRTTFSGDQLDVLEKEFDKTHYPCVNTREDLANKTHLSEARVQVWFSNRRAKWRR
23927550_peptide
Paired box
9
134
GLNGLPQLGGMFLNGRPLPDPLRHRIVELAHCGIRPCDISRQLLISHGSVSKMLAGRYYEMGAIRPGTIGGSKPKVATPEVVSKIELYKQENPTIFAWEIRDRLISEGVCTNSTVPSVSSINRILR
23927550_peptide
Homeodomain
239
291
RRSRTTFSGDQLDVLEKEFDKTHYPCVNTREDLANKTHLSEVWFSNRRAKWRR
23927551_peptide
Paired box
9
133
GLNGLPQLGGMFLNGRPLPDPLRHRIVELAHCGIRPCDISRQLLISHGSVSKMLGRYYEMGAIRPGTIGGSKPKVATPEVVSKIELYKQENPTIFAWEIRDRLISEGVCTNSTVPSVSSINRILR
23927551_peptide
Homeodomain
238
290
RRSRTTFSGDQLDVLEKEFDKTHYPCVNTREDLANKTHLSEVWFSNRRAKWRR
23927552_peptide
Paired box
1
66
MGAIRPGTIGGSKPKVATPEVVSKIELYKQENPTIFAWEIRDRLISEGVCTNSTVPSVSSINRILR
23927552_peptide
Homeodomain
171
227
RRSRTTFSGDQLDVLEKEFDKTHYPCVNTREDLANKTHLSEARVQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Saccoglossus kowalevskii
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI53909
Acyrthosiphon pisum
ACYPI53909
I
0.829
GM24657
Drosophila sechellia
FBgn0179520
I
0.821
GM24656
Drosophila sechellia
FBgn0179519
I
0.821
toe
Drosophila melanogaster
FBgn0036285
D
0.821
GD12721
Drosophila simulans
FBgn0184448
I
0.821
GH16065
Drosophila grimshawi
FBgn0123536
I
0.821
KGM_15291
Danaus plexippus
KGM_15291
I
0.821
TC007194
Tribolium castaneum
TC007194
I
0.821
PHUM427950
Pediculus humanus
PHUM427950
I
0.821
eyg
Drosophila melanogaster
FBgn0000625
D
0.821
GK12628
Drosophila willistoni
FBgn0214637
I
0.821
GF24979
Drosophila ananassae
FBgn0101971
I
0.821
MDOA004637
Musca domestica
MDOA004637
I
0.813
GI12329
Drosophila mojavensis
FBgn0135086
I
0.813
GA23573
Drosophila pseudoobscura
FBgn0244973
I
0.813
MDOA006963
Musca domestica
MDOA006963
I
0.813
LCUP004289
Lucilia cuprina
LCUP004289
I
0.813
GB55405
Apis mellifera
GB55405
I
0.805
LCUP004290
Lucilia cuprina
LCUP004290
I
0.805
GF24980
Drosophila ananassae
FBgn0101972
I
0.805
SINV20456
Solenopsis invicta
SINV20456
I
0.792
Hsal_03768--XP_394294.2_APIME
Harpegnathos saltator
Hsal_03768--XP_394294.2_APIME
I
0.786
AFAF005899
Anopheles farauti
AFAF005899
I
0.775
NEMVEDRAFT_v1g168908
Nematostella vectensis
NEMVEDRAFT_v1g168908
I
0.764
tetur01g15740
Tetranychus urticae
tetur01g15740
I
0.754
NV12005
Nasonia vitripennis
NV12005
I
0.750
AATE019032
Anopheles atroparvus
AATE019032
I
0.748
MCINX015151
Melitaea cinxia
MCINX015151
I
0.747
TriadG3502
Trichoplax adhaerens
TriadG3502
N
0.732
ENSTNIG00000002471
Tetraodon nigroviridis
ENSTNIG00000002471
I
0.724
GL24956
Drosophila persimilis
FBgn0162543
I
0.716
GA10346
Drosophila pseudoobscura
FBgn0070404
I
0.716
PAX6
Homo sapiens
ENSG00000007372
D
0.715
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.715
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.715
ENSFALG00000010839
Ficedula albicollis
ENSFALG00000010839
I
0.715
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.715
Aan_R006618
Calypte anna
Aan_R006618
I
0.715
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.715
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.715
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.715
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.715
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.715
ENSAPLG00000004928
Anas platyrhynchos
ENSAPLG00000004928
I
0.715
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.715
Gfo_R001537
Geospiza fortis
Gfo_R001537
I
0.715
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.715
PAX6
Bos taurus
ENSBTAG00000004561
I
0.715
TC008176
Tribolium castaneum
TC008176
I
0.715
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.715
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.715
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.715
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.715
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.715
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.715
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.715
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.715
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.715
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.715
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.715
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.715
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.715
Pax6
Mus musculus
ENSMUSG00000027168
D
0.715
PAX6
Gallus gallus
ENSGALG00000012123
I
0.715
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.715
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.715
AMAM022755
Anopheles maculatus
AMAM022755
I
0.713
GI12327
Drosophila mojavensis
FBgn0135084
I
0.712
GJ13265
Drosophila virilis
FBgn0200491
I
0.712
GH16064
Drosophila grimshawi
FBgn0123535
I
0.712
GG13831
Drosophila erecta
FBgn0106094
I
0.711
GE20121
Drosophila yakuba
FBgn0237444
I
0.711
CGI_10020873
Crassostrea gigas
CGI_10020873
N
0.709
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.708
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.708
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.708
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.708
GD12719
Drosophila simulans
FBgn0184446
I
0.708
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.708
GB50342
Apis mellifera
GB50342
I
0.708
PAX6
Felis catus
ENSFCAG00000007094
I
0.708
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.708
NV15820
Nasonia vitripennis
NV15820
I
0.708
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.708
pax6b
Danio rerio
ENSDARG00000045936
I
0.707
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.707
ey
Drosophila melanogaster
FBgn0005558
D
0.707
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.707
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.707
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.707
ey
Drosophila virilis
FBgn0028754
I
0.707
pax6a
Danio rerio
ENSDARG00000103379
I
0.707
GE14559
Drosophila yakuba
FBgn0232158
I
0.707
GG16399
Drosophila erecta
FBgn0108631
I
0.707
ACYPI067710
Acyrthosiphon pisum
ACYPI067710
I
0.707
ey
Drosophila sechellia
FBgn0068720
I
0.707
GG13832
Drosophila erecta
FBgn0106095
I
0.704
GE20122
Drosophila yakuba
FBgn0237445
I
0.704
HMEL010417
Heliconius melpomene
HMEL010417
I
0.703
SMU15027897
Schmidtea mediterranea
SMU15027897
I
0.703