Pax2 (Mus musculus)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSMUSG00000004231 T237405_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax2
M02690_2.00
Mus musculus
NRTCAYKB

VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY

RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
1.000 1.000
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN

NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
1.000 1.000
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN

NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
1.000 1.000
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN

NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
1.000 1.000
PAX2
M10810_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
1.000 1.000
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN

NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
1.000 1.000
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.718 0.718
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.718 0.718
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.718 0.718
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.718 0.718
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.718 0.718
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.718 0.718
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.718 0.718
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.718 0.718
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.718 0.718
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.718 0.718
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.718 0.718
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.718 0.718
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.718 0.718
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.718 0.718
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.718 0.718
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712 0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712 0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712 0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712 0.712
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.712 0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000004340 Paired box 15 139
ENSMUSP00000004340 Homeodomain 251 281
ENSMUSP00000134311 Paired box 20 144
ENSMUSP00000134311 Homeodomain 225 255
ENSMUSP00000134661 Paired box 16 140
ENSMUSP00000134661 Homeodomain 229 259

Links

Other Homeodomain,Paired box family TFs
Other Mus musculus TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSMPUG00000016955 Mustela putorius furo ENSMPUG00000016955 I 1.000
PAX2 Oryctolagus cuniculus ENSOCUG00000012860 I 1.000
PAX2 Otolemur garnettii ENSOGAG00000015274 I 1.000
PAX2 Macaca mulatta ENSMMUG00000009163 I 1.000
PAX2 Microcebus murinus ENSMICG00000001357 I 1.000
PAX2 Felis catus ENSFCAG00000011602 I 1.000
PAX2 Homo sapiens ENSG00000075891 D 1.000
PAX2 Gorilla gorilla ENSGGOG00000014908 I 1.000
PAX2 Loxodonta africana ENSLAFG00000002388 I 1.000
ENSPANG00000021132 Papio anubis ENSPANG00000021132 I 1.000
PAX2 Procavia capensis ENSPCAG00000006623 I 1.000
PAX2 Tursiops truncatus ENSTTRG00000015106 I 1.000
ENSP00000359319-D1 Bos grunniens ENSP00000359319-D1 I 1.000
ENSP00000359319 Macaca fascicularis ENSP00000359319 I 1.000
Myotis_brandtii_PAX2_10025650 Myotis brandtii Myotis_brandtii_PAX2_10025650 I 1.000
ENSSTOG00000011575 Ictidomys tridecemlineatus ENSSTOG00000011575 I 1.000
PAX2 Sus scrofa ENSSSCG00000010556 I 1.000
ENSPPYG00000002572 Pongo abelii ENSPPYG00000002572 I 1.000
PAX2 Pan troglodytes ENSPTRG00000002853 I 1.000
PAX2 Pteropus vampyrus ENSPVAG00000002148 I 1.000
Pax2 Rattus norvegicus ENSRNOG00000014253 I 1.000
PAX2 Erinaceus europaeus ENSEEUG00000001995 I 1.000
PAX2 Ochotona princeps ENSOPRG00000007096 I 1.000
PAX2 Callithrix jacchus ENSCJAG00000017397 I 1.000
PAX2 Dasypus novemcinctus ENSDNOG00000013328 I 1.000
ENSCSAG00000005568 Chlorocebus sabaeus ENSCSAG00000005568 I 1.000
PAX2 Bos taurus ENSBTAG00000021566 I 1.000
PAX2 Canis familiaris ENSCAFG00000009709 I 1.000
ENSAMEG00000017523 Ailuropoda melanoleuca ENSAMEG00000017523 I 1.000
PAX2 Cavia porcellus ENSCPOG00000000939 I 1.000
PAX2 Equus caballus ENSECAG00000021123 I 1.000
ENSSHAG00000014328 Sarcophilus harrisii ENSSHAG00000014328 I 0.994
PAX2 Monodelphis domestica ENSMODG00000019353 I 0.994
ENSMEUG00000013247 Macropus eugenii ENSMEUG00000013247 I 0.994
Gfo_R002455 Geospiza fortis Gfo_R002455 I 0.987
ENSFALG00000007308 Ficedula albicollis ENSFALG00000007308 I 0.987
Pax2 Dipodomys ordii ENSDORG00000006193 I 0.987
PAX2 Taeniopygia guttata ENSTGUG00000007620 I 0.987
PAX2 Myotis lucifugus ENSMLUG00000015106 I 0.981
PAX2 Echinops telfairi ENSETEG00000014765 I 0.981
CAA71206 Xenopus laevis CAA71206 I 0.974
pax2.L Xenopus laevis XB-GENE-486805 I 0.974
Pvit_13858 Pogona vitticeps Pvit_13858 I 0.968
ENSLACG00000017470 Latimeria chalumnae ENSLACG00000017470 I 0.968
CAA04222 Xenopus laevis CAA04222 I 0.955
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.917
ENSAPLG00000014579 Anas platyrhynchos ENSAPLG00000014579 I 0.878
fgenesh2_kg.scaffold_131000004 Branchiostoma floridae fgenesh2_kg.scaffold_131000004 I 0.846
Sakowv30045649m.g Saccoglossus kowalevskii Sakowv30045649m.g I 0.808
NEMVEDRAFT_v1g239535 Nematostella vectensis NEMVEDRAFT_v1g239535 I 0.795
ENSOARG00000015552 Ovis aries ENSOARG00000015552 I 0.731
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.731
XP_002159617.1 Hydra magnipapillata XP_002159617.1 N 0.731
pax6b Oryzias latipes ENSORLG00000009913 I 0.731
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.731
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.724
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.724
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.724
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.724
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.724
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.724
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.724
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.724
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.724
pax6a Danio rerio ENSDARG00000103379 I 0.724
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.724
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.724
PAX6 Felis catus ENSFCAG00000007094 I 0.724
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.724
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.724
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.724
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.724
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.724
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.724
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.724
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.718
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.718
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.718
pax6 Xenopus tropicalis XB-GENE-484088 I 0.718
pax6.S Xenopus laevis XB-GENE-6464331 I 0.718
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.718
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.718
ENSTRUG00000017375 Takifugu rubripes ENSTRUG00000017375 I 0.718
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.718
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.718
PAX6 Bos taurus ENSBTAG00000004561 I 0.718
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.718
PAX6 Microcebus murinus ENSMICG00000004089 I 0.718
pax6b Danio rerio ENSDARG00000045936 I 0.718
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.718
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.718
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.718
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.718
PAX6 Gallus gallus ENSGALG00000012123 I 0.718
PAX6 Homo sapiens ENSG00000007372 D 0.718
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.718
ENSGMOG00000019087 Gadus morhua ENSGMOG00000019087 I 0.718
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.718
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.718
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.718
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.718
PAX6 Procavia capensis ENSPCAG00000005165 I 0.718
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.718
ENSPPYG00000003386 Pongo abelii ENSPPYG00000003386 I 0.718
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.718
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.718
Pax6 Mus musculus ENSMUSG00000027168 D 0.718
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.718
PAX6 Sus scrofa ENSSSCG00000013320 I 0.718
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.718
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.712
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.712
pax6.L Xenopus laevis XB-GENE-865046 I 0.712
SMAR013763 Strigamia maritima SMAR013763 I 0.712
AMEC013051 Anopheles melas AMEC013051 I 0.705
AFUN011570 Anopheles funestus AFUN011570 I 0.705
AMEM002691 Anopheles merus AMEM002691 I 0.705
AFAF017899 Anopheles farauti AFAF017899 I 0.705
AQUA008313 Anopheles quadriannulatus AQUA008313 I 0.705
ASTEI06205 Anopheles stephensi ASTEI06205 I 0.705
ASIS012617 Anopheles sinensis ASIS012617 I 0.705
AEPI005798 Anopheles epiroticus AEPI005798 I 0.705
AMIN002132 Anopheles minimus AMIN002132 I 0.705
ADIR000973 Anopheles dirus ADIR000973 I 0.705
AALB006643 Anopheles albimanus AALB006643 I 0.705
PAX6 Equus caballus ENSECAG00000021000 I 0.705
CGI_10026438 Crassostrea gigas CGI_10026438 I 0.705
AARA001110 Anopheles arabiensis AARA001110 I 0.705
AATE014626 Anopheles atroparvus AATE014626 I 0.705
ACUA016154 Anopheles culicifacies ACUA016154 I 0.705
ACHR009845 Anopheles christyi ACHR009845 I 0.705
AGAP000067 Anopheles gambiae AGAP000067 I 0.705