CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAX2
(
Procavia capensis
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSPCAG00000006623
T237455_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX2
M03294_2.00
Homo sapiens
SGTCACGCWTSRNTGVNY
RNBCANYSAWGCGTGACS
SELEX
Jolma et al.(2013)
PAX2_1
1.000
1.000
PAX2
M05428_2.00
Homo sapiens
NSGYYACGCNYSRNYRVNBN
NVNBYRNYSRNGCGTRRCSN
SELEX
Yin et al.(2017)
PAX2_eDBD_HT-SELEX
1.000
1.000
PAX2
M10808_2.00
Homo sapiens
NNHNRTYAHKBRHDMBBNN
NNVVKHDYVMDWRAYNDNN
Transfac
Matys et al.(2006)
V$PAX2_01
1.000
1.000
PAX2
M10809_2.00
Homo sapiens
NDSTTTNNN
NNNAAASHN
Transfac
Matys et al.(2006)
V$PAX2_02
1.000
1.000
PAX2
M10810_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX2_Q2
1.000
1.000
PAX2
M05429_2.00
Homo sapiens
NSGTCACGCWTSANYGVNYN
NRNBCRNTSAWGCGTGACSN
SELEX
Yin et al.(2017)
PAX2_eDBD_Methyl-HT-SELEX
1.000
1.000
Pax2
M02690_2.00
Mus musculus
NRTCAYKB
VMRTGAYN
SELEX
Mathelier et al.(2014)
MA0067.1
0.994
0.994
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.718
0.718
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.718
0.718
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.718
0.718
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.718
0.718
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.718
0.718
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.718
0.718
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.718
0.718
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.718
0.718
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.718
0.718
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.718
0.718
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.718
0.718
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.718
0.718
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.718
0.718
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.718
0.718
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.718
0.718
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.712
0.712
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.712
0.712
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.712
0.712
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.712
0.712
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.712
0.712
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000006193
Paired box
16
140
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR
ENSPCAP00000006193
Homeodomain
251
281
RADTFTQQQLEALDRVFERPSYPDVFQASEH
Links
Other
Homeodomain,Paired box
family TFs
Other
Procavia capensis
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000002572
Pongo abelii
ENSPPYG00000002572
I
1.000
Myotis_brandtii_PAX2_10025650
Myotis brandtii
Myotis_brandtii_PAX2_10025650
I
1.000
PAX2
Gorilla gorilla
ENSGGOG00000014908
I
1.000
ENSPANG00000021132
Papio anubis
ENSPANG00000021132
I
1.000
PAX2
Otolemur garnettii
ENSOGAG00000015274
I
1.000
PAX2
Felis catus
ENSFCAG00000011602
I
1.000
PAX2
Equus caballus
ENSECAG00000021123
I
1.000
PAX2
Erinaceus europaeus
ENSEEUG00000001995
I
1.000
PAX2
Pan troglodytes
ENSPTRG00000002853
I
1.000
PAX2
Loxodonta africana
ENSLAFG00000002388
I
1.000
ENSSTOG00000011575
Ictidomys tridecemlineatus
ENSSTOG00000011575
I
1.000
PAX2
Ochotona princeps
ENSOPRG00000007096
I
1.000
Pax2
Mus musculus
ENSMUSG00000004231
D
1.000
PAX2
Oryctolagus cuniculus
ENSOCUG00000012860
I
1.000
PAX2
Macaca mulatta
ENSMMUG00000009163
I
1.000
PAX2
Tursiops truncatus
ENSTTRG00000015106
I
1.000
ENSP00000359319
Macaca fascicularis
ENSP00000359319
I
1.000
PAX2
Microcebus murinus
ENSMICG00000001357
I
1.000
ENSP00000359319-D1
Bos grunniens
ENSP00000359319-D1
I
1.000
PAX2
Dasypus novemcinctus
ENSDNOG00000013328
I
1.000
PAX2
Homo sapiens
ENSG00000075891
D
1.000
PAX2
Callithrix jacchus
ENSCJAG00000017397
I
1.000
PAX2
Cavia porcellus
ENSCPOG00000000939
I
1.000
PAX2
Bos taurus
ENSBTAG00000021566
I
1.000
ENSAMEG00000017523
Ailuropoda melanoleuca
ENSAMEG00000017523
I
1.000
PAX2
Sus scrofa
ENSSSCG00000010556
I
1.000
ENSCSAG00000005568
Chlorocebus sabaeus
ENSCSAG00000005568
I
1.000
PAX2
Canis familiaris
ENSCAFG00000009709
I
1.000
PAX2
Pteropus vampyrus
ENSPVAG00000002148
I
1.000
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.994
ENSSHAG00000014328
Sarcophilus harrisii
ENSSHAG00000014328
I
0.994
PAX2
Monodelphis domestica
ENSMODG00000019353
I
0.994
ENSMPUG00000016955
Mustela putorius furo
ENSMPUG00000016955
I
0.994
ENSMEUG00000013247
Macropus eugenii
ENSMEUG00000013247
I
0.994
PAX2
Taeniopygia guttata
ENSTGUG00000007620
I
0.987
Gfo_R002455
Geospiza fortis
Gfo_R002455
I
0.987
PAX2
Echinops telfairi
ENSETEG00000014765
I
0.981
ENSFALG00000007308
Ficedula albicollis
ENSFALG00000007308
I
0.981
PAX2
Myotis lucifugus
ENSMLUG00000015106
I
0.981
CAA71206
Xenopus laevis
CAA71206
I
0.974
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.974
Pax2
Dipodomys ordii
ENSDORG00000006193
I
0.968
Pvit_13858
Pogona vitticeps
Pvit_13858
I
0.968
ENSLACG00000017470
Latimeria chalumnae
ENSLACG00000017470
I
0.968
CAA04222
Xenopus laevis
CAA04222
I
0.955
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.917
ENSAPLG00000014579
Anas platyrhynchos
ENSAPLG00000014579
I
0.878
fgenesh2_kg.scaffold_131000004
Branchiostoma floridae
fgenesh2_kg.scaffold_131000004
I
0.846
Sakowv30045649m.g
Saccoglossus kowalevskii
Sakowv30045649m.g
I
0.808
NEMVEDRAFT_v1g239535
Nematostella vectensis
NEMVEDRAFT_v1g239535
I
0.795
ENSOARG00000015552
Ovis aries
ENSOARG00000015552
I
0.731
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.731
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.731
XP_002159617.1
Hydra magnipapillata
XP_002159617.1
N
0.731
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.731
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.724
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.724
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.724
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.724
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.724
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.724
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.724
PAX6
Felis catus
ENSFCAG00000007094
I
0.724
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.724
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.724
pax6a
Danio rerio
ENSDARG00000103379
I
0.724
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.724
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.724
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.724
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.724
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.724
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.724
NEMVEDRAFT_v1g168908
Nematostella vectensis
NEMVEDRAFT_v1g168908
I
0.724
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.724
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.724
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.718
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.718
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.718
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.718
ENSTRUG00000017375
Takifugu rubripes
ENSTRUG00000017375
I
0.718
Ogr12767
Ophisaurus gracilis
Ogr12767
I
0.718
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.718
Cmyd_10016391
Chelonia mydas
Cmyd_10016391
I
0.718
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.718
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.718
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.718
PAX6
Gallus gallus
ENSGALG00000012123
I
0.718
ENSGMOG00000019087
Gadus morhua
ENSGMOG00000019087
I
0.718
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.718
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.718
PAX6
Homo sapiens
ENSG00000007372
D
0.718
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.718
PAX6
Bos taurus
ENSBTAG00000004561
I
0.718
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.718
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.718
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.718
pax6b
Danio rerio
ENSDARG00000045936
I
0.718
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.718
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.718
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.718
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.718
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.718
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.718
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.718
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.718
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.718
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.718
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.718
Pax6
Mus musculus
ENSMUSG00000027168
D
0.718
ENSPPYG00000003386
Pongo abelii
ENSPPYG00000003386
I
0.718
DAPPUDRAFT_249978
Daphnia pulex
DAPPUDRAFT_249978
I
0.712
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.712
SMAR013763
Strigamia maritima
SMAR013763
I
0.712
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.712
AMEC013051
Anopheles melas
AMEC013051
I
0.705
AFUN011570
Anopheles funestus
AFUN011570
I
0.705
AFAF017899
Anopheles farauti
AFAF017899
I
0.705
AMEM002691
Anopheles merus
AMEM002691
I
0.705
AQUA008313
Anopheles quadriannulatus
AQUA008313
I
0.705
ASTEI06205
Anopheles stephensi
ASTEI06205
I
0.705
ASIS012617
Anopheles sinensis
ASIS012617
I
0.705
AEPI005798
Anopheles epiroticus
AEPI005798
I
0.705
AMIN002132
Anopheles minimus
AMIN002132
I
0.705
ACUA016154
Anopheles culicifacies
ACUA016154
I
0.705
AALB006643
Anopheles albimanus
AALB006643
I
0.705
CGI_10026438
Crassostrea gigas
CGI_10026438
I
0.705
AGAP000067
Anopheles gambiae
AGAP000067
I
0.705
AARA001110
Anopheles arabiensis
AARA001110
I
0.705
AATE014626
Anopheles atroparvus
AATE014626
I
0.705
PAX6
Equus caballus
ENSECAG00000021000
I
0.705
ACHR009845
Anopheles christyi
ACHR009845
I
0.705
ADIR000973
Anopheles dirus
ADIR000973
I
0.705