Carubv10014142m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10014142m.g T246761_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014142m LOB 102 200
Carubv10014396m LOB 35 133

Links

Other LOB family TFs
Other Capsella rubella TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.28625s0323 Boechera stricta Bostr.28625s0323 N 0.990
LBD22 Arabidopsis thaliana AT3G13850 N 0.990
LBD22 Arabidopsis lyrata fgenesh2_kg.3__1489__AT3G13850.1 N 0.990
Cagra.0736s0021 Capsella grandiflora Cagra.0736s0021 N 0.990
Thhalv10021306m.g Eutrema salsugineum Thhalv10021306m.g N 0.929
Bra021513 Brassica rapa Bra021513 N 0.879
Bo1g134830 Brassica oleracea Bo1g134830 N 0.879
Bo5g132010 Brassica oleracea Bo5g132010 N 0.869
TCM_029052 Theobroma cacao TCM_029052 N 0.818
Solyc06g062630.2 Solanum lycopersicum Solyc06g062630.2 N 0.814
POPTR_0003s04520 Populus trichocarpa POPTR_0003s04520 N 0.808
Gorai.011G064500 Gossypium raimondii Gorai.011G064500 N 0.808
POPTR_0001s20110 Populus trichocarpa POPTR_0001s20110 N 0.808
cassava34925.m1 Manihot esculenta cassava34925.m1 N 0.798
28694.m000665 Ricinus communis 28694.m000665 N 0.798
Cucsa.360530 Cucumis sativus Cucsa.360530 N 0.798
cassava34926.m1 Manihot esculenta cassava34926.m1 N 0.798
Cla015827 Citrullus lanatus Cla015827 N 0.798
cassava2716.m1 Manihot esculenta cassava2716.m1 N 0.788
SapurV1A.0697s0010 Salix purpurea SapurV1A.0697s0010 N 0.788
GLYMA07G01170 Glycine max GLYMA07G01170 N 0.788
MDP0000257227 Malus domestica MDP0000257227 N 0.778
MTR_8g017090 Medicago truncatula MTR_8g017090 N 0.778
GLYMA08G20550 Glycine max GLYMA08G20550 N 0.778
Ca_10077 Cicer arietinum Ca_10077 N 0.768
PGSC0003DMG400004880 Solanum tuberosum PGSC0003DMG400004880 N 0.768
evm.TU.supercontig_25.41 Carica papaya evm.TU.supercontig_25.41 N 0.768
chr3.CM0049.30.nd Lotus japonicus chr3.CM0049.30.nd N 0.768
Pm013344 Prunus mume Pm013344 N 0.768
Bra027392 Brassica rapa Bra027392 N 0.762
TCM_029050 Theobroma cacao TCM_029050 N 0.758
mgf019664m Mimulus guttatus mgf019664m N 0.747
gene23043-v1.0-hybrid Fragaria vesca gene23043-v1.0-hybrid N 0.727