Pavir.J16587 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J16587 T247236_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16587.1.p LOB 2 105

Links

Other LOB family TFs
Other Panicum virgatum TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA03G26970 Oryza nivara ONIVA03G26970 N 1.000
OPUNC03G23160 Oryza punctata OPUNC03G23160 N 1.000
GRMZM2G017319 Zea mays GRMZM2G017319 N 1.000
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N 1.000
OBART03G25820 Oryza barthii OBART03G25820 N 1.000
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N 1.000
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N 1.000
BGIOSGA010258 Oryza indica BGIOSGA010258 N 1.000
OS03G0609500 Oryza sativa OS03G0609500 N 1.000
Si037275m.g Setaria italica Si037275m.g N 1.000
OB03G33950 Oryza brachyantha OB03G33950 N 0.990
LPERR03G21440 Leersia perrieri LPERR03G21440 N 0.990
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N 0.990
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N 0.980
MLOC_51325 Hordeum vulgare MLOC_51325 N 0.980
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N 0.980
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N 0.970
TRIUR3_28321 Triticum urartu TRIUR3_28321 N 0.970
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.776
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.763
OB03G31560 Oryza brachyantha OB03G31560 N 0.755
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.755
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.755
OS03G0445700 Oryza sativa OS03G0445700 N 0.755
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.755
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.755
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.755
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.755
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.755
OBART03G22820 Oryza barthii OBART03G22820 N 0.755
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.755
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.755
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.753
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.753
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.753
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.747
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.745
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.745
PK15647.1 Cannabis sativa PK15647.1 N 0.741
PK25954.1 Cannabis sativa PK25954.1 N 0.739
Si031011m.g Setaria italica Si031011m.g N 0.735
Bo9g019150 Brassica oleracea Bo9g019150 N 0.735
Bra012164 Brassica rapa Bra012164 N 0.735
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.735
Bo5g132850 Brassica oleracea Bo5g132850 N 0.735
LBD37 Arabidopsis thaliana AT5G67420 N 0.735
Bra037847 Brassica rapa Bra037847 N 0.735
Bo7g063630 Brassica oleracea Bo7g063630 N 0.735
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.735
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.735
Bo2g168020 Brassica oleracea Bo2g168020 N 0.727
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.727
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.727
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.727
Bra031833 Brassica rapa Bra031833 N 0.727
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N 0.727
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.727
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.727
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.727
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.725
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.724
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N 0.724
PK29811.1 Cannabis sativa PK29811.1 N 0.721
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N 0.719
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.717
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.717
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.717
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.714
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.714
Bra012913 Brassica rapa Bra012913 N 0.714
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.714
LBD38 Arabidopsis thaliana AT3G49940 N 0.714
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.714
Bra036040 Brassica rapa Bra036040 N 0.714
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.714
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.714
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.714
Bo7g099150 Brassica oleracea Bo7g099150 N 0.714
Bo8g079200 Brassica oleracea Bo8g079200 N 0.714
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N 0.714
MDP0000239820 Malus domestica MDP0000239820 N 0.711
MDP0000151330 Malus domestica MDP0000151330 N 0.711
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.711
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.711
OPUNC07G19440 Oryza punctata OPUNC07G19440 N 0.711
OPUNC07G19460 Oryza punctata OPUNC07G19460 N 0.711
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.711
OS07G0589000 Oryza sativa OS07G0589000 N 0.711
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.711
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.711
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.711
OBART07G20600 Oryza barthii OBART07G20600 N 0.711
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.707
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.707
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.707
Cla014228 Citrullus lanatus Cla014228 N 0.707
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.707
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.704
29661.m000902 Ricinus communis 29661.m000902 N 0.704
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.704
MTR_5g015880 Medicago truncatula MTR_5g015880 N 0.704
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.704
Bo1g003550 Brassica oleracea Bo1g003550 N 0.704
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.704
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.704
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.704
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.704
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.704
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.704
TCM_000766 Theobroma cacao TCM_000766 N 0.704
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.704
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.704
Ca_09342 Cicer arietinum Ca_09342 N 0.704
Bra011772 Brassica rapa Bra011772 N 0.704
cassava9459.m1 Manihot esculenta cassava9459.m1 N 0.701
Cucsa.352730 Cucumis sativus Cucsa.352730 N 0.701
PK03075.1 Cannabis sativa PK03075.1 N 0.701