CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_22988
(
Hordeum vulgare
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
MLOC_22988
T249440_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.911
0.781
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN
NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.939
0.754
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.906
0.667
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.911
0.781
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN
NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.906
0.667
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.822
0.664
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_22988.1
MADF
36
106
EMDTTFRDATLKGPLWEEVSRKLAELGYKRSSKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFQELEAL
MLOC_22988.1
MADF
444
515
DMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLEAI
MLOC_22988.2
MADF
45
93
LAELGYKRSSKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFQELEAL
MLOC_22988.2
MADF
431
502
DMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLEAI
MLOC_22988.3
MADF
310
381
DMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLEAI
Links
Other
MADF
family TFs
Other
Hordeum vulgare
TFs
254 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy