Gorai.007G371500 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.007G371500 T250709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.949 0.750
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.949 0.750
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.949 0.750
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.943 0.681
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G371500.1 MADF 113 189
Gorai.007G371500.2 MADF 113 189

Links

Other MADF family TFs
Other Gossypium raimondii TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28077.m000081 Ricinus communis 28077.m000081 I 0.874
29815.m000504 Ricinus communis 29815.m000504 I 0.950
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.901
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.907
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.934
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.949
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.849
Bo5g137800 Brassica oleracea Bo5g137800 I 0.945
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.949
Bra029812 Brassica rapa Bra029812 I 0.945
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.863
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.942
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.942
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.954
Ca_20148 Cicer arietinum Ca_20148 I 0.951
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.959
Cla018015 Citrullus lanatus Cla018015 I 0.956
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.956
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.949
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.890
F775_31501 Aegilops tauschii F775_31501 I 0.849
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.948
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.913
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.956
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.903
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.956
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.851
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.886
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.897
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.847
MDP0000201016 Malus domestica MDP0000201016 I 0.893
MDP0000399495 Malus domestica MDP0000399495 I 0.893
MDP0000415733 Malus domestica MDP0000415733 I 0.893
mgf008067m Mimulus guttatus mgf008067m I 0.915
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.863
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.951
OB04G18670 Oryza brachyantha OB04G18670 I 0.849
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.863
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.849
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.849
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.849
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.850
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.853
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.956
PK04914.1 Cannabis sativa PK04914.1 D 0.943
Pm026265 Prunus mume Pm026265 I 0.944
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.920
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.863
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.858
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.944
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.901
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.920
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.857
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.857
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.842
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.858
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.858
Si009787m.g Setaria italica Si009787m.g I 0.847
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.951
TCM_022397 Theobroma cacao TCM_022397 I 0.966
TCM_043551 Theobroma cacao TCM_043551 I 0.873
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.942
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.883
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.883
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.849
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.954
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.912