CpipJ_CPIJ008336 (Culex pipiens)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CpipJ_CPIJ008336 T252704_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.852 0.852
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.852 0.852
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.815 0.815
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.815 0.815
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.815 0.815
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.815 0.815
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.815 0.815
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.815 0.815
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.815 0.815
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.815 0.815
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.815 0.815
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.815 0.815
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.815 0.815
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.815 0.815
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.815 0.815
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.815 0.815
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.815 0.815
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.815 0.815
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.815 0.815
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.815 0.815
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.815 0.815
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.815 0.815
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.815 0.815
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.815 0.815
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008336-RA MADS box 266 292

Links

Other MADS box family TFs
Other Culex pipiens TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AARA004020 Anopheles arabiensis AARA004020 I 0.000
ADIR005096 Anopheles dirus ADIR005096 I 0.000
AEPI009051 Anopheles epiroticus AEPI009051 I 0.000
AFUN000829 Anopheles funestus AFUN000829 I 0.000
AMEC017008 Anopheles melas AMEC017008 I 0.000
AQUA011339 Anopheles quadriannulatus AQUA011339 I 0.000
GB44259 Apis mellifera GB44259 N 0.000
ACEP18972 Atta cephalotes ACEP18972 I 0.000
Cflo_03170--XP_394708.3_APIME Camponotus floridanus Cflo_03170--XP_394708.3_APIME I 0.000
CapteG180266 Capitella teleta CapteG180266 N 0.000
CpipJ_CPIJ014773 Culex pipiens CpipJ_CPIJ014773 I 0.000
CPIJ014773 Culex quinquefasciatus CPIJ014773 I 0.000
DAPPUDRAFT_309730 Daphnia pulex DAPPUDRAFT_309730 I 0.000
YQE_09240 Dendroctonus ponderosae YQE_09240 I 0.000
EmuJ_000805200 Echinococcus multilocularis EmuJ_000805200 N 0.000
Hsal_13684--XP_394708.3_APIME Harpegnathos saltator Hsal_13684--XP_394708.3_APIME I 0.000
HelroG110615 Helobdella robusta HelroG110615 N 0.000
LotgiG179263 Lottia gigantea LotgiG179263 N 0.000
PHUM505970 Pediculus humanus PHUM505970 I 0.000
SMAR013730 Strigamia maritima SMAR013730 N 0.000
TC004710 Tribolium castaneum TC004710 I 0.000
L798_12084 Zootermopsis nevadensis L798_12084 I 0.000