AT5G27810 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G27810 T252916_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G27810.1 MADS box 1 28

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.786
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.750
GLYMA11G26260 Glycine max GLYMA11G26260 N 0.720
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.714