Thhalv10012000m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10012000m.g T259129_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10012000m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.854
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.854
Ca_06495 Cicer arietinum Ca_06495 I 0.841
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.833
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.830
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.828
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.812
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.800
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.800
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.792
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.792
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.792
TCM_026842 Theobroma cacao TCM_026842 I 0.792
Bra029469 Brassica rapa Bra029469 I 0.792
Bo9g078450 Brassica oleracea Bo9g078450 I 0.792
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
AT5G27810 Arabidopsis thaliana AT5G27810 I 0.786
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.783
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.778
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.778
Ca_13275 Cicer arietinum Ca_13275 I 0.778
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.778
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
Ca_08934 Cicer arietinum Ca_08934 I 0.773
mgf026186m Mimulus guttatus mgf026186m I 0.773
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.771
Bra018490 Brassica rapa Bra018490 I 0.771
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.771
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.756
Pm003258 Prunus mume Pm003258 N 0.756
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.756
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
Cla005226 Citrullus lanatus Cla005226 I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.750
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.750
Bo2g104810 Brassica oleracea Bo2g104810 I 0.750
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.750
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.750
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.745
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.745
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.745
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.739
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.738
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.733
Bra041022 Brassica rapa Bra041022 I 0.733
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.733
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.729
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.729
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
30128.m008984 Ricinus communis 30128.m008984 I 0.729
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.727
MTR_2g016210 Medicago truncatula MTR_2g016210 N 0.723
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.723
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.723
30199.m000879 Ricinus communis 30199.m000879 I 0.723
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.721
GLYMA11G26260 Glycine max GLYMA11G26260 N 0.720
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.717
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.714
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.708
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.708
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
MDP0000925348 Malus domestica MDP0000925348 I 0.708
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
LjSGA_102554.1 Lotus japonicus LjSGA_102554.1 I 0.707
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.705
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.702
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.702
Pm003257 Prunus mume Pm003257 I 0.702
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.702
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.702
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.702