LjSGA_102554.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_102554.1 T259399_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_102554.1 MADS box 10 54

Links

Other MADS box family TFs
Other Lotus japonicus TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.732
Ca_03592 Cicer arietinum Ca_03592 N 0.732
chr1.LjT43D18.110.nd Lotus japonicus chr1.LjT43D18.110.nd N 0.711
LjT04G17.30.nc Lotus japonicus LjT04G17.30.nc N 0.707
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.707
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.707
Cla009163 Citrullus lanatus Cla009163 I 0.707
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.707
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.707