cassava15247.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava15247.m1 T257177_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15247.m1 MADS box 10 54

Links

Other MADS box family TFs
Other Manihot esculenta TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30199.m000879 Ricinus communis 30199.m000879 I 0.822
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.822
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.822
Ca_06495 Cicer arietinum Ca_06495 I 0.822
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.822
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.800
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.800
Pm004396 Prunus mume Pm004396 I 0.800
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.800
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.800
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.800
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
MDP0000925348 Malus domestica MDP0000925348 I 0.800
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.778
Ca_13275 Cicer arietinum Ca_13275 I 0.778
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.778
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.778
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.778
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.778
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.778
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.778
TCM_026842 Theobroma cacao TCM_026842 I 0.778
MDP0000846004 Malus domestica MDP0000846004 I 0.778
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.756
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.756
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.756
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.756
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.756
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.756
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.756
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.756
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.756
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.756
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.756
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.756
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.756
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.756
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.756
AGL80 Arabidopsis thaliana AT5G48670 D 0.756
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.756
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.756
mgf026186m Mimulus guttatus mgf026186m I 0.756
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.756
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.756
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.733
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.733
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.733
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.733
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.733
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.733
TCM_025670 Theobroma cacao TCM_025670 I 0.733
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.733
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.733
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
Ca_08934 Cicer arietinum Ca_08934 I 0.733
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.733
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.733
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.711
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.711
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
SapurV1A.0690s0130 Salix purpurea SapurV1A.0690s0130 N 0.711
MDP0000451827 Malus domestica MDP0000451827 N 0.711
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.711
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.711
TCM_025674 Theobroma cacao TCM_025674 N 0.711
TCM_036473 Theobroma cacao TCM_036473 N 0.711
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.711
Bo9g078450 Brassica oleracea Bo9g078450 I 0.711
Bra029469 Brassica rapa Bra029469 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.711
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.711
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.711
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.711