MDP0000846004 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000846004 T258778_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000846004 MADS box 10 58

Links

Other MADS box family TFs
Other Malus domestica TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm004396 Prunus mume Pm004396 I 0.933
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.933
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.917
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.917
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.896
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.896
MDP0000925348 Malus domestica MDP0000925348 I 0.896
30199.m000879 Ricinus communis 30199.m000879 I 0.894
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.875
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.875
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.875
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.875
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.875
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.875
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.875
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.862
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.854
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.854
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.854
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.854
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.854
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.853
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.851
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.844
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.833
Bra018490 Brassica rapa Bra018490 I 0.833
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.833
AGL80 Arabidopsis thaliana AT5G48670 D 0.833
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.833
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.822
Cla005226 Citrullus lanatus Cla005226 I 0.822
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.822
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.822
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.812
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.812
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.812
TCM_026842 Theobroma cacao TCM_026842 I 0.812
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.812
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.812
30128.m008984 Ricinus communis 30128.m008984 I 0.812
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.812
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.809
Pm003257 Prunus mume Pm003257 I 0.809
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.804
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.804
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.800
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.800
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.800
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.800
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
mgf026186m Mimulus guttatus mgf026186m I 0.795
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.792
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.792
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.792
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.792
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.791
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.778
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.771
Bo9g078450 Brassica oleracea Bo9g078450 I 0.771
Bra029469 Brassica rapa Bra029469 I 0.771
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.771
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.771
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.771
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
TCM_025670 Theobroma cacao TCM_025670 I 0.750
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.750
evm.TU.supercontig_34.41 Carica papaya evm.TU.supercontig_34.41 N 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.750
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.750
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.750
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.750
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.750
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.745
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.729
TCM_042799 Theobroma cacao TCM_042799 I 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
TCM_025671 Theobroma cacao TCM_025671 I 0.729
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.729
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.729
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.729
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.729
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.729
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.729
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.729
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.723
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.723
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.723
evm.TU.contig_25253.3 Carica papaya evm.TU.contig_25253.3 N 0.720
Bra041022 Brassica rapa Bra041022 I 0.711
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.708
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.708
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.708
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.708
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.708
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.708
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.708
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.708
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.708
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.708
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
Ca_08934 Cicer arietinum Ca_08934 I 0.705
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700