gene18029-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene18029-v1.0-hybrid T258341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18029.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000846004 Malus domestica MDP0000846004 I 0.917
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.917
Pm004396 Prunus mume Pm004396 I 0.911
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.911
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.896
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.896
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.875
MDP0000925348 Malus domestica MDP0000925348 I 0.875
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.875
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.875
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.862
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.854
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.854
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.854
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.854
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.854
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.854
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.854
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.854
30199.m000879 Ricinus communis 30199.m000879 I 0.854
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.854
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.854
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.853
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.844
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.844
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.833
30128.m008984 Ricinus communis 30128.m008984 I 0.833
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.833
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.833
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.833
TCM_026842 Theobroma cacao TCM_026842 I 0.833
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.833
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.833
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.822
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.822
Cla005226 Citrullus lanatus Cla005226 I 0.822
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.812
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.812
Bra018490 Brassica rapa Bra018490 I 0.812
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.812
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.812
AGL80 Arabidopsis thaliana AT5G48670 D 0.812
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.812
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.792
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.792
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.792
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.792
Bo9g078450 Brassica oleracea Bo9g078450 I 0.792
Bra029469 Brassica rapa Bra029469 I 0.792
Pm003257 Prunus mume Pm003257 I 0.792
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.792
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.792
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.792
TCM_025670 Theobroma cacao TCM_025670 I 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.792
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.792
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.771
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.771
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.771
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.771
TCM_025671 Theobroma cacao TCM_025671 I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.771
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.771
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.766
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.750
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.750
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.750
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.750
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.750
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.729
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.729
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.729
TCM_025676 Theobroma cacao TCM_025676 N 0.729
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.729
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.729
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.729
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.729
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
TCM_042848 Theobroma cacao TCM_042848 N 0.729
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.729
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.729
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.729
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.729
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.729
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.708
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
evm.TU.supercontig_34.41 Carica papaya evm.TU.supercontig_34.41 N 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.708
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.708
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.708
Cla009163 Citrullus lanatus Cla009163 I 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.708
TCM_022993 Theobroma cacao TCM_022993 N 0.705