CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.E01736
(
Eucalyptus grandis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Eucgr.E01736
T257949_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.761
0.761
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.E01736.1
MADS box
10
56
YIANDAARKATFKKRKNGLMKKVSELSTLCGIEACAIVYSQYQAEPE
Links
Other
MADS box
family TFs
Other
Eucalyptus grandis
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Eucgr.E01737
Eucalyptus grandis
Eucgr.E01737
I
0.957
Eucgr.E01734
Eucalyptus grandis
Eucgr.E01734
I
0.957
Eucgr.E01733
Eucalyptus grandis
Eucgr.E01733
I
0.957
Cla005226
Citrullus lanatus
Cla005226
I
0.844
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.822
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.822
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.818
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.809
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.804
TCM_026842
Theobroma cacao
TCM_026842
I
0.804
Cucsa.050930
Cucumis sativus
Cucsa.050930
I
0.800
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.792
30199.m000879
Ricinus communis
30199.m000879
I
0.787
Ca_13275
Cicer arietinum
Ca_13275
I
0.778
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.778
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.778
Pm004396
Prunus mume
Pm004396
I
0.778
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.773
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.773
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.771
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.771
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.761
LjSGA_104570.1
Lotus japonicus
LjSGA_104570.1
I
0.759
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.756
MDP0000925348
Malus domestica
MDP0000925348
I
0.756
Ca_06495
Cicer arietinum
Ca_06495
I
0.750
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.750
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.750
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.745
LjSGA_018236.1
Lotus japonicus
LjSGA_018236.1
I
0.744
LjSGA_057783.1
Lotus japonicus
LjSGA_057783.1
I
0.741
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.739
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.739
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.739
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.739
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.733
GLYMA18G05916
Glycine max
GLYMA18G05916
N
0.733
PRUPE_ppa017207mg
Prunus persica
PRUPE_ppa017207mg
N
0.733
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.733
Lus10022316.g
Linum usitatissimum
Lus10022316.g
I
0.729
Thhalv10023873m.g
Eutrema salsugineum
Thhalv10023873m.g
I
0.729
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.729
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.729
Ciclev10013728m.g
Citrus clementina
Ciclev10013728m.g
I
0.729
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.729
Thhalv10024119m.g
Eutrema salsugineum
Thhalv10024119m.g
I
0.729
30128.m008984
Ricinus communis
30128.m008984
I
0.729
Ciclev10006519m.g
Citrus clementina
Ciclev10006519m.g
I
0.729
AGL80
Arabidopsis thaliana
AT5G48670
D
0.729
Ca_08934
Cicer arietinum
Ca_08934
I
0.727
mgf026186m
Mimulus guttatus
mgf026186m
I
0.727
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.727
Pm003257
Prunus mume
Pm003257
I
0.723
PRUPE_ppa019749mg
Prunus persica
PRUPE_ppa019749mg
I
0.723
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.721
TCM_026845
Theobroma cacao
TCM_026845
I
0.717
Ciclev10024463m.g
Citrus clementina
Ciclev10024463m.g
I
0.717
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.717
orange1.1g040642m.g
Citrus sinensis
orange1.1g040642m.g
I
0.717
MDP0000152718
Malus domestica
MDP0000152718
I
0.711
MDP0000159587
Malus domestica
MDP0000159587
I
0.711
Eucgr.B01824
Eucalyptus grandis
Eucgr.B01824
I
0.711
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.711
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.711
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.711
Pm003258
Prunus mume
Pm003258
N
0.711
Bra029469
Brassica rapa
Bra029469
I
0.708
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.708
Bra018490
Brassica rapa
Bra018490
I
0.708
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.708
MDP0000846004
Malus domestica
MDP0000846004
I
0.708
Lus10014883.g
Linum usitatissimum
Lus10014883.g
I
0.708
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.708
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.708
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.708
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.705
LjSGA_147985.1
Lotus japonicus
LjSGA_147985.1
I
0.704
MDP0000726295
Malus domestica
MDP0000726295
I
0.704
MDP0000123878
Malus domestica
MDP0000123878
I
0.704
TCM_025671
Theobroma cacao
TCM_025671
I
0.702