Lus10014883.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10014883.g T258559_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014883 MADS box 10 60

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.896
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.833
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.812
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.812
Cla005226 Citrullus lanatus Cla005226 I 0.778
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.750
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.733
Pm004396 Prunus mume Pm004396 I 0.733
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
Lus10022100.g Linum usitatissimum Lus10022100.g N 0.724
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.708
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.708
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.708
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.708
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
Pm003257 Prunus mume Pm003257 I 0.702
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702