cassava19828.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava19828.m1 T257185_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava19828.m1 MADS box 10 58

Links

Other MADS box family TFs
Other Manihot esculenta TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.958
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.938
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.938
MDP0000846004 Malus domestica MDP0000846004 I 0.917
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.917
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.917
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.917
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.917
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.917
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.896
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.896
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.896
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.896
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.896
30128.m008984 Ricinus communis 30128.m008984 I 0.875
30199.m000879 Ricinus communis 30199.m000879 I 0.875
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.875
Bra018490 Brassica rapa Bra018490 I 0.875
TCM_026842 Theobroma cacao TCM_026842 I 0.875
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.875
Pm004396 Prunus mume Pm004396 I 0.867
Cla005226 Citrullus lanatus Cla005226 I 0.867
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
Bo2g104810 Brassica oleracea Bo2g104810 I 0.854
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.854
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.854
Ca_13275 Cicer arietinum Ca_13275 I 0.854
AGL80 Arabidopsis thaliana AT5G48670 D 0.854
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.854
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.854
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.854
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.848
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.848
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.833
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.833
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.833
MDP0000925348 Malus domestica MDP0000925348 I 0.833
TCM_025670 Theobroma cacao TCM_025670 I 0.833
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.826
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.812
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.812
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.812
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.812
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.812
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.812
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.812
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.812
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.812
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.812
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.812
Bra029469 Brassica rapa Bra029469 I 0.812
Bo9g078450 Brassica oleracea Bo9g078450 I 0.812
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.800
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.800
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.792
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.792
Ca_06495 Cicer arietinum Ca_06495 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.792
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.792
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.792
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.792
TCM_025671 Theobroma cacao TCM_025671 I 0.792
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.792
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.792
Pm003257 Prunus mume Pm003257 I 0.792
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.771
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.771
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.771
TCM_026845 Theobroma cacao TCM_026845 I 0.771
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.771
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.771
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.750
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.750
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.750
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.750
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.750
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.750
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.750
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.750
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.750
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.750
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.750
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.750
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.750
Cla009163 Citrullus lanatus Cla009163 I 0.750
Ca_08369 Cicer arietinum Ca_08369 N 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.750
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.750
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.750
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.729
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.729
TCM_042848 Theobroma cacao TCM_042848 N 0.729
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.729
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.729
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.729
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.729
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.729
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.729
TCM_025676 Theobroma cacao TCM_025676 N 0.729
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.729
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.729
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.729
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.729
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.711
PRUPE_ppa017207mg Prunus persica PRUPE_ppa017207mg N 0.711
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.708
Bra041022 Brassica rapa Bra041022 I 0.708
Bo5g145000 Brassica oleracea Bo5g145000 I 0.708
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.708
evm.TU.supercontig_34.41 Carica papaya evm.TU.supercontig_34.41 N 0.708
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.708
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.708
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.708
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.708
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.708
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.708
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.708