GLYMA18G04760 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA18G04760 T254226_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.822 0.822
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA18G04760.1 MADS box 10 55

Links

Other MADS box family TFs
Other Glycine max TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.978
Ca_13275 Cicer arietinum Ca_13275 I 0.956
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.956
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.933
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.933
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.911
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.911
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.889
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.889
Cla005226 Citrullus lanatus Cla005226 I 0.889
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.889
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.867
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.867
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.867
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.867
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.867
Ca_06495 Cicer arietinum Ca_06495 I 0.864
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.848
Pm004396 Prunus mume Pm004396 I 0.844
Bo9g078450 Brassica oleracea Bo9g078450 I 0.844
Bra029469 Brassica rapa Bra029469 I 0.844
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.844
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.844
MDP0000925348 Malus domestica MDP0000925348 I 0.844
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.844
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
TCM_026842 Theobroma cacao TCM_026842 I 0.844
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.833
30199.m000879 Ricinus communis 30199.m000879 I 0.830
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.826
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.822
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.822
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.822
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.822
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.822
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.822
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.812
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.812
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.812
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.812
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.800
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.800
mgf026186m Mimulus guttatus mgf026186m I 0.795
Bra018490 Brassica rapa Bra018490 I 0.792
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.783
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.783
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.778
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.778
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.778
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.778
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
30128.m008984 Ricinus communis 30128.m008984 I 0.771
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.771
Bo2g104810 Brassica oleracea Bo2g104810 I 0.771
MDP0000846004 Malus domestica MDP0000846004 I 0.771
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.756
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.756
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.756
Bo5g145000 Brassica oleracea Bo5g145000 I 0.756
Bra041022 Brassica rapa Bra041022 I 0.756
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.756
TCM_025671 Theobroma cacao TCM_025671 I 0.756
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.756
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.756
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.745
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.744
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.733
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.733
Cla009163 Citrullus lanatus Cla009163 I 0.733
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
TCM_042799 Theobroma cacao TCM_042799 I 0.733
TCM_026845 Theobroma cacao TCM_026845 I 0.733
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.733
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.733
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.733
TCM_025670 Theobroma cacao TCM_025670 I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.717
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.711
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.711
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.711
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.711
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.711
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
GLYMA18G05990 Glycine max GLYMA18G05990 N 0.708
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.705
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.705
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
Pm003257 Prunus mume Pm003257 I 0.702
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702