MDP0000925348 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000925348 T258780_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.844 0.844
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000925348 MADS box 10 55

Links

Other MADS box family TFs
Other Malus domestica TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm004396 Prunus mume Pm004396 I 0.956
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.956
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.933
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.913
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.913
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.911
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.911
MDP0000846004 Malus domestica MDP0000846004 I 0.896
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.889
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.875
30199.m000879 Ricinus communis 30199.m000879 I 0.872
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.872
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.867
Ca_13275 Cicer arietinum Ca_13275 I 0.867
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.867
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.867
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.867
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.867
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.867
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.867
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.867
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.864
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.854
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
TCM_026842 Theobroma cacao TCM_026842 I 0.844
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.844
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.844
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.844
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.837
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.833
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.833
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.833
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.833
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.833
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.833
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.833
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.830
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.826
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.824
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.822
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.822
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.822
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.818
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.818
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.812
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.812
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.812
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.812
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.808
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.804
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.804
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.800
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.800
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.800
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.800
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.800
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.800
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.800
Ca_06495 Cicer arietinum Ca_06495 I 0.795
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.793
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.793
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.787
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.778
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.778
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.778
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.773
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.771
30128.m008984 Ricinus communis 30128.m008984 I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.766
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.766
Pm003257 Prunus mume Pm003257 I 0.766
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.766
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.766
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.766
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.760
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N 0.760
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.760
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.756
TCM_042799 Theobroma cacao TCM_042799 I 0.756
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.756
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.756
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.756
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.756
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.756
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.756
Cla009163 Citrullus lanatus Cla009163 I 0.756
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.745
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.744
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
TCM_026845 Theobroma cacao TCM_026845 I 0.733
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.733
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
TCM_025671 Theobroma cacao TCM_025671 I 0.723
evm.TU.contig_25253.3 Carica papaya evm.TU.contig_25253.3 N 0.720
evm.TU.supercontig_1136.1 Carica papaya evm.TU.supercontig_1136.1 N 0.720
Pm003258 Prunus mume Pm003258 N 0.711
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.711
Ciclev10013876m.g Citrus clementina Ciclev10013876m.g N 0.711
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.711
orange1.1g038848m.g Citrus sinensis orange1.1g038848m.g N 0.711
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
TCM_025670 Theobroma cacao TCM_025670 I 0.708
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704