evm.TU.contig_35265 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_35265 T258085_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_35265.1 MADS box 10 31

Links

Other MADS box family TFs
Other Carica papaya TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.864
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.864
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.864
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.864
TCM_026842 Theobroma cacao TCM_026842 I 0.818
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.818
Cla009163 Citrullus lanatus Cla009163 I 0.773
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.773
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.773
MDP0000925348 Malus domestica MDP0000925348 I 0.773
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.773
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.773
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.773
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.773
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.773
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.727
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.727
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.727
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.727
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.727
Bra029469 Brassica rapa Bra029469 I 0.727
Bo9g078450 Brassica oleracea Bo9g078450 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.727
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.727