Thhalv10022373m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10022373m.g T259177_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10022373m MADS box 10 58

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 0.938
Bra029469 Brassica rapa Bra029469 I 0.938
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.938
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.938
Bra018490 Brassica rapa Bra018490 I 0.917
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.896
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.896
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.896
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.896
Bo2g104810 Brassica oleracea Bo2g104810 I 0.896
AGL80 Arabidopsis thaliana AT5G48670 D 0.875
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.862
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.833
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.822
Ca_13275 Cicer arietinum Ca_13275 I 0.822
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.822
Ca_06495 Cicer arietinum Ca_06495 I 0.818
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
30128.m008984 Ricinus communis 30128.m008984 I 0.812
TCM_026842 Theobroma cacao TCM_026842 I 0.812
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.812
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.800
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.800
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.791
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.787
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.787
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.787
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.787
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.787
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.778
MDP0000925348 Malus domestica MDP0000925348 I 0.778
Bra041022 Brassica rapa Bra041022 I 0.778
Bo5g145000 Brassica oleracea Bo5g145000 I 0.778
Cla005226 Citrullus lanatus Cla005226 I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.773
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.771
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.771
MDP0000846004 Malus domestica MDP0000846004 I 0.771
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.766
30199.m000879 Ricinus communis 30199.m000879 I 0.766
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.766
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.762
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.756
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.750
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.745
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.745
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.745
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.745
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.745
Pm003257 Prunus mume Pm003257 I 0.745
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.744
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.739
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.733
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.733
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.727
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.724
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.724
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.717
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.717
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.711
Cla009163 Citrullus lanatus Cla009163 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
MTR_1g077300 Medicago truncatula MTR_1g077300 N 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.708
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
Ca_08934 Cicer arietinum Ca_08934 I 0.705
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.702
TCM_025671 Theobroma cacao TCM_025671 I 0.702