POPTR_0005s00420 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0005s00420 T255822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s00420.1 MADS box 10 58

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.933
Ca_13275 Cicer arietinum Ca_13275 I 0.933
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.917
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.917
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.917
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.911
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.896
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.896
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.896
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.889
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.875
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.875
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.875
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.875
30199.m000879 Ricinus communis 30199.m000879 I 0.872
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.872
MDP0000925348 Malus domestica MDP0000925348 I 0.867
Ca_06495 Cicer arietinum Ca_06495 I 0.864
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
MDP0000846004 Malus domestica MDP0000846004 I 0.854
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.854
Bra018490 Brassica rapa Bra018490 I 0.854
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.854
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.852
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
Pm004396 Prunus mume Pm004396 I 0.844
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
30128.m008984 Ricinus communis 30128.m008984 I 0.833
Bra029469 Brassica rapa Bra029469 I 0.833
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.833
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.833
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.833
Bo9g078450 Brassica oleracea Bo9g078450 I 0.833
Bo2g104810 Brassica oleracea Bo2g104810 I 0.833
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.833
AGL80 Arabidopsis thaliana AT5G48670 D 0.833
TCM_026842 Theobroma cacao TCM_026842 I 0.833
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.833
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.833
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.826
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.826
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.818
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.812
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.812
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.812
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.800
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.793
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.793
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
TCM_025670 Theobroma cacao TCM_025670 I 0.792
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.792
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.787
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.787
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.778
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
mgf026186m Mimulus guttatus mgf026186m I 0.773
TCM_026845 Theobroma cacao TCM_026845 I 0.771
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.771
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.771
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
TCM_025671 Theobroma cacao TCM_025671 I 0.766
Pm003257 Prunus mume Pm003257 I 0.766
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.766
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.765
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.756
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.756
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.756
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.756
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.750
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.750
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.750
TCM_042799 Theobroma cacao TCM_042799 I 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.750
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.744
MDP0000123878 Malus domestica MDP0000123878 I 0.741
MDP0000726295 Malus domestica MDP0000726295 I 0.741
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.739
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.733
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.733
Bo5g145000 Brassica oleracea Bo5g145000 I 0.733
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.733
Bra041022 Brassica rapa Bra041022 I 0.733
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.729
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N 0.720
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.720
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.720
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.717
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.717
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.714
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.711
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.708
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
TCM_023041 Theobroma cacao TCM_023041 N 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.708
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
Cla009163 Citrullus lanatus Cla009163 I 0.708
Gorai.013G155300 Gossypium raimondii Gorai.013G155300 N 0.706
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
POPTR_0006s21630 Populus trichocarpa POPTR_0006s21630 N 0.705
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.705
POPTR_0016s06850 Populus trichocarpa POPTR_0016s06850 N 0.705
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.705
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
MTR_3g466900 Medicago truncatula MTR_3g466900 N 0.704
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.702
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.702
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.702
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.702
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.702
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.702
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702