Bostr.2392s0039 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.2392s0039 T257602_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2392s0039.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Boechera stricta TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.867
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.822
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
AGL80 Arabidopsis thaliana AT5G48670 D 0.812
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.800
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.800
Ca_13275 Cicer arietinum Ca_13275 I 0.800
TCM_026842 Theobroma cacao TCM_026842 I 0.800
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.792
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.792
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
Pm004396 Prunus mume Pm004396 I 0.778
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.778
MDP0000925348 Malus domestica MDP0000925348 I 0.778
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
Ca_06495 Cicer arietinum Ca_06495 I 0.773
mgf026186m Mimulus guttatus mgf026186m I 0.773
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.756
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.756
AT5G27810 Arabidopsis thaliana AT5G27810 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.745
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.745
30199.m000879 Ricinus communis 30199.m000879 I 0.745
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.744
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.744
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.739
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.739
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.733
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.733
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.733
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.733
Cla005226 Citrullus lanatus Cla005226 I 0.733
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.733
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.729
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.727
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.727
GLYMA11G26260 Glycine max GLYMA11G26260 N 0.720
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.717
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.714
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.714
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
Bra041022 Brassica rapa Bra041022 I 0.711
Bo5g145000 Brassica oleracea Bo5g145000 I 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
30128.m008984 Ricinus communis 30128.m008984 I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
Pm003257 Prunus mume Pm003257 I 0.702
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702