LjSGA_018236.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_018236.1 T259369_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_018236.1 MADS box 10 52

Links

Other MADS box family TFs
Other Lotus japonicus TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.926
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.848
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.837
TCM_026842 Theobroma cacao TCM_026842 I 0.814
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.800
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.800
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.791
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.791
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.791
Ca_08934 Cicer arietinum Ca_08934 I 0.773
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
Ca_06495 Cicer arietinum Ca_06495 I 0.773
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.767
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.767
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.767
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.767
Bra029469 Brassica rapa Bra029469 I 0.767
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.767
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.767
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.767
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.767
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.767
Bo9g078450 Brassica oleracea Bo9g078450 I 0.767
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.744
MDP0000925348 Malus domestica MDP0000925348 I 0.744
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.744
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.744
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.744
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.744
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.744
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.744
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.733
Ca_13275 Cicer arietinum Ca_13275 I 0.733
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
Pm004396 Prunus mume Pm004396 I 0.733
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.733
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.733
Pm003258 Prunus mume Pm003258 N 0.733
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.727
Cla009163 Citrullus lanatus Cla009163 I 0.721
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.721
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.721
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.721
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.721
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.717
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711