Lus10032108.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10032108.g T258613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10032108 MADS box 10 58

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.979
MDP0000846004 Malus domestica MDP0000846004 I 0.875
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.867
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
Pm004396 Prunus mume Pm004396 I 0.867
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.854
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.854
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.844
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.833
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.826
Ca_13275 Cicer arietinum Ca_13275 I 0.822
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.822
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.815
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.812
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.812
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.812
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.812
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.792
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.792
30128.m008984 Ricinus communis 30128.m008984 I 0.792
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.792
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.792
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.792
Bra018490 Brassica rapa Bra018490 I 0.792
MDP0000925348 Malus domestica MDP0000925348 I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.787
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.783
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.783
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.783
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.778
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
Bra029469 Brassica rapa Bra029469 I 0.771
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
Bo9g078450 Brassica oleracea Bo9g078450 I 0.771
Bo2g104810 Brassica oleracea Bo2g104810 I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
TCM_026842 Theobroma cacao TCM_026842 I 0.771
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.756
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.756
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.756
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.756
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.756
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.750
Ca_06495 Cicer arietinum Ca_06495 I 0.750
GLYMA18G05990 Glycine max GLYMA18G05990 N 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.750
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.745
Pm003257 Prunus mume Pm003257 I 0.745
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.745
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.744
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.738
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.733
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.729
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.729
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.729
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.729
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.729
mgf026186m Mimulus guttatus mgf026186m I 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.723
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.723
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.721
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.708
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.708
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.708
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.708
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.708
MDP0000133671 Malus domestica MDP0000133671 N 0.708
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.708
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
MDP0000123878 Malus domestica MDP0000123878 I 0.704
MDP0000726295 Malus domestica MDP0000726295 I 0.704
TCM_025671 Theobroma cacao TCM_025671 I 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700