Carubv10014232m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10014232m.g T257772_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014232m MADS box 10 58

Links

Other MADS box family TFs
Other Capsella rubella TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 1.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.938
Bra018490 Brassica rapa Bra018490 I 0.917
Bo9g078450 Brassica oleracea Bo9g078450 I 0.917
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.917
Bra029469 Brassica rapa Bra029469 I 0.917
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.917
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.896
Bo2g104810 Brassica oleracea Bo2g104810 I 0.896
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.875
AGL80 Arabidopsis thaliana AT5G48670 D 0.875
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.875
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.854
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.854
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.833
TCM_026842 Theobroma cacao TCM_026842 I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.792
30128.m008984 Ricinus communis 30128.m008984 I 0.792
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
30199.m000879 Ricinus communis 30199.m000879 I 0.771
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.771
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.771
Ca_13275 Cicer arietinum Ca_13275 I 0.771
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.771
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.750
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.750
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.750
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.750
MDP0000925348 Malus domestica MDP0000925348 I 0.750
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.750
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.750
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.750
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.750
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.750
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.729
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.729
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.729
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.729
Bo5g145000 Brassica oleracea Bo5g145000 I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.729
Bra041022 Brassica rapa Bra041022 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.729
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.729
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
Pm003257 Prunus mume Pm003257 I 0.729
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.708
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.708
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.708
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.708
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.708
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
TCM_023006 Theobroma cacao TCM_023006 N 0.708
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.708
TCM_042799 Theobroma cacao TCM_042799 I 0.708
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.708
Cla005226 Citrullus lanatus Cla005226 I 0.708
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.708
TCM_025671 Theobroma cacao TCM_025671 I 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708