Bra027116 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra027116 T253329_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027116.1-P MADS box 12 64

Links

Other MADS box family TFs
Other Brassica rapa TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g043470 Brassica oleracea Bo9g043470 I 0.938
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.771
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I 0.771
AGL55 Arabidopsis thaliana AT1G60920 D 0.771
AGL56 Arabidopsis lyrata fgenesh2_kg.2__374__AT1G60880.1 I 0.771
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I 0.771
Bra040965 Brassica rapa Bra040965 I 0.750
Bo9g043530 Brassica oleracea Bo9g043530 I 0.750
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.750
Carubv10025699m.g Capsella rubella Carubv10025699m.g N 0.729
Carubv10022197m.g Capsella rubella Carubv10022197m.g I 0.708