AGL56 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.2__374__AT1G60880.1 T254023_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__374__AT1G60880.1 MADS box 12 64

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I 0.875
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.875
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.854
AGL55 Arabidopsis thaliana AT1G60920 D 0.833
Carubv10021715m.g Capsella rubella Carubv10021715m.g I 0.812
AGL56 Arabidopsis thaliana AT1G60880 I 0.792
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I 0.771
Bra040965 Brassica rapa Bra040965 I 0.771
Bo9g043530 Brassica oleracea Bo9g043530 I 0.771
Bra027116 Brassica rapa Bra027116 I 0.771
Bo9g043470 Brassica oleracea Bo9g043470 I 0.750
Carubv10025699m.g Capsella rubella Carubv10025699m.g N 0.708