Carubv10022197m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10022197m.g T257812_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G38620
M10931_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G38620_01 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022197m MADS box 12 63

Links

Other MADS box family TFs
Other Capsella rubella TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10021917m.g Capsella rubella Carubv10021917m.g I 0.958
Carubv10025699m.g Capsella rubella Carubv10025699m.g N 0.854
Bostr.26959s0207 Boechera stricta Bostr.26959s0207 N 0.812
AGL97 Arabidopsis thaliana AT1G46408 N 0.792
Bra018727 Brassica rapa Bra018727 N 0.750
Bostr.0597s0065 Boechera stricta Bostr.0597s0065 N 0.750
Bostr.13129s0496 Boechera stricta Bostr.13129s0496 N 0.750
Bo6g014350 Brassica oleracea Bo6g014350 N 0.750
Bo6g013290 Brassica oleracea Bo6g013290 N 0.750
AGL99 Arabidopsis thaliana AT5G04640 N 0.750
Cagra.1718s0014 Capsella grandiflora Cagra.1718s0014 N 0.729
Carubv10006209m.g Capsella rubella Carubv10006209m.g N 0.729
Bo9g043470 Brassica oleracea Bo9g043470 I 0.729
AT5G38620 Arabidopsis thaliana AT5G38620 D 0.729
Bo6g018670 Brassica oleracea Bo6g018670 N 0.729
Thhalv10015623m.g Eutrema salsugineum Thhalv10015623m.g N 0.708
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.708
Bra027116 Brassica rapa Bra027116 I 0.708
AT5G49420 Arabidopsis thaliana AT5G49420 I 0.708
Bo7g092540 Brassica oleracea Bo7g092540 N 0.708
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.708
Carubv10021715m.g Capsella rubella Carubv10021715m.g I 0.708