OMERI06G24380 (Oryza meridionalis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OMERI06G24380 T255197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.769 0.769
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.769 0.769
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.744 0.744
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.744 0.744
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.718 0.718
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.718 0.718
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.718 0.718
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI06G24380.1 MADS box 10 48

Links

Other MADS box family TFs
Other Oryza meridionalis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC06G21840 Oryza punctata OPUNC06G21840 I 0.897
OBART06G24100 Oryza barthii OBART06G24100 N 0.850
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.795
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.795
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.795
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.795
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.795
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.795
F775_30836 Aegilops tauschii F775_30836 I 0.795
OBART02G05380 Oryza barthii OBART02G05380 I 0.795
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.795
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.795
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.795
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.795
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.795
MADS29 Oryza sativa OS02G0170300 I 0.795
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.795
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.795
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.795
OB02G14670 Oryza brachyantha OB02G14670 I 0.795
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.769
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.769
Solyc10g017640.1 Solanum lycopersicum Solyc10g017640.1 I 0.769
ORUFI06G25880 Oryza rufipogon ORUFI06G25880 I 0.750
OS06G0667200 Oryza sativa OS06G0667200 I 0.750
ONIVA03G43670 Oryza nivara ONIVA03G43670 I 0.750
BGIOSGA023435 Oryza indica BGIOSGA023435 I 0.750
OLONG_011724 Oryza longistaminata OLONG_011724 I 0.750
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.744
Cagra.5588s0006 Capsella grandiflora Cagra.5588s0006 I 0.744
OB05G24910 Oryza brachyantha OB05G24910 I 0.744
Carubv10002596m.g Capsella rubella Carubv10002596m.g I 0.744
OBART05G17040 Oryza barthii OBART05G17040 I 0.744
OB06G31860 Oryza brachyantha OB06G31860 I 0.744
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.744
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.744
Bo3g009340 Brassica oleracea Bo3g009340 I 0.744
Bo8g050720 Brassica oleracea Bo8g050720 I 0.744
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.744
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.744
Si007187m.g Setaria italica Si007187m.g I 0.744
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.744
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.744
Bra006214 Brassica rapa Bra006214 I 0.744
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.744
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.744
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.744
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.744
MADS4 Oryza sativa OS05G0423400 I 0.744
Pm019404 Prunus mume Pm019404 I 0.744
OGLUM06G25360 Oryza glumaepatula OGLUM06G25360 N 0.731
MDP0000179718 Malus domestica MDP0000179718 I 0.727
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.718
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I 0.718
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.718
TCM_015049 Theobroma cacao TCM_015049 I 0.718
TCM_005818 Theobroma cacao TCM_005818 I 0.718
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.718
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.718
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.718
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I 0.718
TRIUR3_33318 Triticum urartu TRIUR3_33318 I 0.718
Traes_6AS_9AA76345D Triticum aestivum Traes_6AS_9AA76345D I 0.718
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.718
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.718
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.718
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.718
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.718
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.718
Gorai.008G112400 Gossypium raimondii Gorai.008G112400 I 0.718
Gorai.004G169000 Gossypium raimondii Gorai.004G169000 I 0.718
Gorai.007G009800 Gossypium raimondii Gorai.007G009800 I 0.718
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.718
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.718
PK08595.1 Cannabis sativa PK08595.1 I 0.718
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.718
PK01421.1 Cannabis sativa PK01421.1 I 0.718
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.718
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.718
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.718
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.718
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.718
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.718
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.718
30147.m014133 Ricinus communis 30147.m014133 I 0.718
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.718
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.718
Cla006326 Citrullus lanatus Cla006326 I 0.718
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.718
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.718
Eucgr.K00191 Eucalyptus grandis Eucgr.K00191 I 0.718
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.718
Eucgr.K00190 Eucalyptus grandis Eucgr.K00190 I 0.718
Ciclev10032490m.g Citrus clementina Ciclev10032490m.g I 0.718
Cagra.6745s0008 Capsella grandiflora Cagra.6745s0008 I 0.718
Carubv10005697m.g Capsella rubella Carubv10005697m.g I 0.718
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.718
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.718
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.718
LPERR06G00470 Leersia perrieri LPERR06G00470 I 0.718
GSMUA_Achr9G15540_001 Musa acuminata GSMUA_Achr9G15540_001 I 0.718
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.718
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.718
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.718
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.718
OB01G48280 Oryza brachyantha OB01G48280 I 0.718
OBART06G00520 Oryza barthii OBART06G00520 I 0.718
OBART06G14060 Oryza barthii OBART06G14060 I 0.718
OBART01G39540 Oryza barthii OBART01G39540 I 0.718
OB08G28340 Oryza brachyantha OB08G28340 I 0.718
OB06G10570 Oryza brachyantha OB06G10570 I 0.718
AGL19 Arabidopsis lyrata fgenesh2_kg.7__2003__AT4G22950.1 I 0.718
F775_29801 Aegilops tauschii F775_29801 I 0.718
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.718
Bo7g110310 Brassica oleracea Bo7g110310 I 0.718
BGIOSGA022154 Oryza indica BGIOSGA022154 I 0.718
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.718
AGL19 Arabidopsis thaliana AT4G22950 I 0.718
Bo9g093920 Brassica oleracea Bo9g093920 I 0.718
Bo9g166450 Brassica oleracea Bo9g166450 I 0.718
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.718
F775_05654 Aegilops tauschii F775_05654 I 0.718
BRADI3G00730 Brachypodium distachyon BRADI3G00730 I 0.718
Bra029424 Brassica rapa Bra029424 I 0.718
Bra010465 Brassica rapa Bra010465 I 0.718
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.718
OGLUM06G00450 Oryza glumaepatula OGLUM06G00450 I 0.718
ORUFI06G00550 Oryza rufipogon ORUFI06G00550 I 0.718
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.718
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.718
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.718
ORGLA06G0005200 Oryza glaberrima ORGLA06G0005200 I 0.718
MADS2 Oryza sativa OS01G0883100 D 0.718
OS06G0108500 Oryza sativa OS06G0108500 I 0.718
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.718
Si002929m.g Setaria italica Si002929m.g I 0.718
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.718
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.718
OS06G0347700 Oryza sativa OS06G0347700 I 0.718
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.718
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.718
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.718
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.718
OLONG_004735 Oryza longistaminata OLONG_004735 I 0.718
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.718
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.718
OMERI06G00470 Oryza meridionalis OMERI06G00470 I 0.718
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.718
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.718
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.718
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.718
ONIVA06G00530 Oryza nivara ONIVA06G00530 I 0.718
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.718
Si038299m.g Setaria italica Si038299m.g I 0.718