CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OMERI06G24380
(
Oryza meridionalis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
OMERI06G24380
T255197_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.769
0.769
M17_MAIZE
M10959_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.769
0.769
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.744
0.744
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.744
0.744
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.718
0.718
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.718
0.718
Q9AR49_MAIZE
M10980_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.718
0.718
MADS2
M10966_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.718
0.718
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI06G24380.1
MADS box
10
48
RIEDATRRQVTFSKRRAGFLKKAHELAVLCDAQVGVVQM
Links
Other
MADS box
family TFs
Other
Oryza meridionalis
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OPUNC06G21840
Oryza punctata
OPUNC06G21840
I
0.897
OBART06G24100
Oryza barthii
OBART06G24100
N
0.850
ORUFI02G05500
Oryza rufipogon
ORUFI02G05500
I
0.795
Traes_6AS_57E50EE92
Triticum aestivum
Traes_6AS_57E50EE92
I
0.795
OMERI02G06250
Oryza meridionalis
OMERI02G06250
I
0.795
BRADI3G05260
Brachypodium distachyon
BRADI3G05260
I
0.795
TRIUR3_26896
Triticum urartu
TRIUR3_26896
I
0.795
Traes_6BS_5789476CB
Triticum aestivum
Traes_6BS_5789476CB
I
0.795
F775_30836
Aegilops tauschii
F775_30836
I
0.795
OBART02G05380
Oryza barthii
OBART02G05380
I
0.795
LPERR02G04610
Leersia perrieri
LPERR02G04610
I
0.795
ONIVA02G05710
Oryza nivara
ONIVA02G05710
I
0.795
Traes_6DS_9BBDCC9F7
Triticum aestivum
Traes_6DS_9BBDCC9F7
I
0.795
BGIOSGA007056
Oryza indica
BGIOSGA007056
I
0.795
MLOC_65966
Hordeum vulgare
MLOC_65966
I
0.795
MADS29
Oryza sativa
OS02G0170300
I
0.795
OGLUM02G05240
Oryza glumaepatula
OGLUM02G05240
I
0.795
OPUNC02G04560
Oryza punctata
OPUNC02G04560
I
0.795
ORGLA02G0049700
Oryza glaberrima
ORGLA02G0049700
I
0.795
OB02G14670
Oryza brachyantha
OB02G14670
I
0.795
Pavir.J10823
Panicum virgatum
Pavir.J10823
I
0.769
Q9ATE9_PETHY
Petunia x hybrida
Q9ATE9_PETHY
D
0.769
Solyc10g017640.1
Solanum lycopersicum
Solyc10g017640.1
I
0.769
ORUFI06G25880
Oryza rufipogon
ORUFI06G25880
I
0.750
OS06G0667200
Oryza sativa
OS06G0667200
I
0.750
ONIVA03G43670
Oryza nivara
ONIVA03G43670
I
0.750
BGIOSGA023435
Oryza indica
BGIOSGA023435
I
0.750
OLONG_011724
Oryza longistaminata
OLONG_011724
I
0.750
ORGLA05G0147400
Oryza glaberrima
ORGLA05G0147400
I
0.744
Cagra.5588s0006
Capsella grandiflora
Cagra.5588s0006
I
0.744
OB05G24910
Oryza brachyantha
OB05G24910
I
0.744
Carubv10002596m.g
Capsella rubella
Carubv10002596m.g
I
0.744
OBART05G17040
Oryza barthii
OBART05G17040
I
0.744
OB06G31860
Oryza brachyantha
OB06G31860
I
0.744
OMERI05G14780
Oryza meridionalis
OMERI05G14780
I
0.744
SELMODRAFT_450804
Selaginella moellendorffii
SELMODRAFT_450804
I
0.744
Bo3g009340
Brassica oleracea
Bo3g009340
I
0.744
Bo8g050720
Brassica oleracea
Bo8g050720
I
0.744
SELMODRAFT_450837
Selaginella moellendorffii
SELMODRAFT_450837
I
0.744
BGIOSGA019900
Oryza indica
BGIOSGA019900
I
0.744
Si007187m.g
Setaria italica
Si007187m.g
I
0.744
ONIVA05G17790
Oryza nivara
ONIVA05G17790
I
0.744
PRUPE_ppa019267mg
Prunus persica
PRUPE_ppa019267mg
I
0.744
Bra006214
Brassica rapa
Bra006214
I
0.744
GRMZM2G070034
Zea mays
GRMZM2G070034
I
0.744
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.744
OLONG_005253
Oryza longistaminata
OLONG_005253
I
0.744
ORUFI05G18270
Oryza rufipogon
ORUFI05G18270
I
0.744
MADS4
Oryza sativa
OS05G0423400
I
0.744
Pm019404
Prunus mume
Pm019404
I
0.744
OGLUM06G25360
Oryza glumaepatula
OGLUM06G25360
N
0.731
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
TRIUR3_32699
Triticum urartu
TRIUR3_32699
I
0.718
Traes_6AS_D6ABA1D79
Triticum aestivum
Traes_6AS_D6ABA1D79
I
0.718
Traes_1AL_6B108514B
Triticum aestivum
Traes_1AL_6B108514B
I
0.718
TCM_015049
Theobroma cacao
TCM_015049
I
0.718
TCM_005818
Theobroma cacao
TCM_005818
I
0.718
Solyc11g005120.1
Solanum lycopersicum
Solyc11g005120.1
I
0.718
Traes_1BL_F1D5BF5F8
Triticum aestivum
Traes_1BL_F1D5BF5F8
I
0.718
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.718
Traes_6DS_2BAD7A60A
Triticum aestivum
Traes_6DS_2BAD7A60A
I
0.718
TRIUR3_33318
Triticum urartu
TRIUR3_33318
I
0.718
Traes_6AS_9AA76345D
Triticum aestivum
Traes_6AS_9AA76345D
I
0.718
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.718
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.718
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.718
Pavir.Ea03625
Panicum virgatum
Pavir.Ea03625
I
0.718
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.718
Gorai.012G134200
Gossypium raimondii
Gorai.012G134200
I
0.718
Gorai.008G112400
Gossypium raimondii
Gorai.008G112400
I
0.718
Gorai.004G169000
Gossypium raimondii
Gorai.004G169000
I
0.718
Gorai.007G009800
Gossypium raimondii
Gorai.007G009800
I
0.718
Pavir.Ib00012
Panicum virgatum
Pavir.Ib00012
I
0.718
Pavir.J19259
Panicum virgatum
Pavir.J19259
I
0.718
PK08595.1
Cannabis sativa
PK08595.1
I
0.718
LjSGA_021013.1
Lotus japonicus
LjSGA_021013.1
I
0.718
PK01421.1
Cannabis sativa
PK01421.1
I
0.718
Thhalv10026205m.g
Eutrema salsugineum
Thhalv10026205m.g
I
0.718
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.718
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.718
evm.TU.supercontig_125.55
Carica papaya
evm.TU.supercontig_125.55
I
0.718
Eucgr.K00200
Eucalyptus grandis
Eucgr.K00200
I
0.718
cassava4651.m1
Manihot esculenta
cassava4651.m1
I
0.718
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.718
30147.m014133
Ricinus communis
30147.m014133
I
0.718
FBP24_PETHY
Petunia x hybrida
FBP24_PETHY
D
0.718
VIT_16s0022g02400
Vitis vinifera
VIT_16s0022g02400
I
0.718
Cla006326
Citrullus lanatus
Cla006326
I
0.718
fgenesh1_pg.scaffold_267000029
Physcomitrella patens
fgenesh1_pg.scaffold_267000029
I
0.718
Cagra.2248s0020
Capsella grandiflora
Cagra.2248s0020
I
0.718
Eucgr.K00191
Eucalyptus grandis
Eucgr.K00191
I
0.718
Eucgr.K00194
Eucalyptus grandis
Eucgr.K00194
I
0.718
Eucgr.K00190
Eucalyptus grandis
Eucgr.K00190
I
0.718
Ciclev10032490m.g
Citrus clementina
Ciclev10032490m.g
I
0.718
Cagra.6745s0008
Capsella grandiflora
Cagra.6745s0008
I
0.718
Carubv10005697m.g
Capsella rubella
Carubv10005697m.g
I
0.718
AGL15
Vitis vinifera
VIT_13s0158g00100
I
0.718
ORGLA06G0125600
Oryza glaberrima
ORGLA06G0125600
I
0.718
LPERR01G34040
Leersia perrieri
LPERR01G34040
I
0.718
LPERR06G00470
Leersia perrieri
LPERR06G00470
I
0.718
GSMUA_Achr9G15540_001
Musa acuminata
GSMUA_Achr9G15540_001
I
0.718
GSMUA_Achr5G24560_001
Musa acuminata
GSMUA_Achr5G24560_001
I
0.718
GRMZM2G110153
Zea mays
GRMZM2G110153
I
0.718
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.718
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.718
OB01G48280
Oryza brachyantha
OB01G48280
I
0.718
OBART06G00520
Oryza barthii
OBART06G00520
I
0.718
OBART06G14060
Oryza barthii
OBART06G14060
I
0.718
OBART01G39540
Oryza barthii
OBART01G39540
I
0.718
OB08G28340
Oryza brachyantha
OB08G28340
I
0.718
OB06G10570
Oryza brachyantha
OB06G10570
I
0.718
AGL19
Arabidopsis lyrata
fgenesh2_kg.7__2003__AT4G22950.1
I
0.718
F775_29801
Aegilops tauschii
F775_29801
I
0.718
BGIOSGA022872
Oryza indica
BGIOSGA022872
I
0.718
Bo7g110310
Brassica oleracea
Bo7g110310
I
0.718
BGIOSGA022154
Oryza indica
BGIOSGA022154
I
0.718
BGIOSGA000377
Oryza indica
BGIOSGA000377
I
0.718
AGL19
Arabidopsis thaliana
AT4G22950
I
0.718
Bo9g093920
Brassica oleracea
Bo9g093920
I
0.718
Bo9g166450
Brassica oleracea
Bo9g166450
I
0.718
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.718
F775_05654
Aegilops tauschii
F775_05654
I
0.718
BRADI3G00730
Brachypodium distachyon
BRADI3G00730
I
0.718
Bra029424
Brassica rapa
Bra029424
I
0.718
Bra010465
Brassica rapa
Bra010465
I
0.718
OGLUM01G43760
Oryza glumaepatula
OGLUM01G43760
I
0.718
OGLUM06G00450
Oryza glumaepatula
OGLUM06G00450
I
0.718
ORUFI06G00550
Oryza rufipogon
ORUFI06G00550
I
0.718
ORUFI06G14980
Oryza rufipogon
ORUFI06G14980
I
0.718
ORUFI05G05970
Oryza rufipogon
ORUFI05G05970
I
0.718
AMTR_s00001p00270400
Amborella trichopoda
AMTR_s00001p00270400
I
0.718
ORGLA06G0005200
Oryza glaberrima
ORGLA06G0005200
I
0.718
MADS2
Oryza sativa
OS01G0883100
D
0.718
OS06G0108500
Oryza sativa
OS06G0108500
I
0.718
Sb03g041860
Sorghum bicolor
Sb03g041860
I
0.718
Si002929m.g
Setaria italica
Si002929m.g
I
0.718
Sb01g030570
Sorghum bicolor
Sb01g030570
I
0.718
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.718
OS06G0347700
Oryza sativa
OS06G0347700
I
0.718
ORGLA01G0334300
Oryza glaberrima
ORGLA01G0334300
I
0.718
OPUNC06G13170
Oryza punctata
OPUNC06G13170
I
0.718
OLONG_018231
Oryza longistaminata
OLONG_018231
I
0.718
OMERI01G36400
Oryza meridionalis
OMERI01G36400
I
0.718
OLONG_004735
Oryza longistaminata
OLONG_004735
I
0.718
OLONG_003010
Oryza longistaminata
OLONG_003010
I
0.718
OGLUM06G15040
Oryza glumaepatula
OGLUM06G15040
I
0.718
OMERI06G00470
Oryza meridionalis
OMERI06G00470
I
0.718
OMERI06G15180
Oryza meridionalis
OMERI06G15180
I
0.718
OPUNC01G38250
Oryza punctata
OPUNC01G38250
I
0.718
OPUNC02G00040
Oryza punctata
OPUNC02G00040
I
0.718
ONIVA06G16870
Oryza nivara
ONIVA06G16870
I
0.718
ONIVA06G00530
Oryza nivara
ONIVA06G00530
I
0.718
ONIVA01G44390
Oryza nivara
ONIVA01G44390
I
0.718
Si038299m.g
Setaria italica
Si038299m.g
I
0.718