CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400044285
(
Solanum tuberosum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
PGSC0003DMG400044285
T255722_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400094714
MADS box
13
55
SEDIRNSILDRRVTSLFKKAEELSILCDIEVAIIIFRPGSIQP
Links
Other
MADS box
family TFs
Other
Solanum tuberosum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc12g016180.1
Solanum lycopersicum
Solyc12g016180.1
N
0.833
PGSC0003DMG400034608
Solanum tuberosum
PGSC0003DMG400034608
N
0.822
PGSC0003DMG400045649
Solanum tuberosum
PGSC0003DMG400045649
N
0.800
PGSC0003DMG400044231
Solanum tuberosum
PGSC0003DMG400044231
N
0.800
Solyc12g016170.1
Solanum lycopersicum
Solyc12g016170.1
N
0.778
Solyc12g017300.1
Solanum lycopersicum
Solyc12g017300.1
N
0.762
PGSC0003DMG400035476
Solanum tuberosum
PGSC0003DMG400035476
N
0.762
Solyc12g016150.1
Solanum lycopersicum
Solyc12g016150.1
N
0.761