CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g016180.1
(
Solanum lycopersicum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Solyc12g016180.1
T256386_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g016180.1.1
MADS box
13
58
SENVRNSILDRRERSLFKKAEELSILCDVEVAIVIFRPGKIQPITW
Links
Other
MADS box
family TFs
Other
Solanum lycopersicum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc12g016170.1
Solanum lycopersicum
Solyc12g016170.1
N
0.978
PGSC0003DMG400034608
Solanum tuberosum
PGSC0003DMG400034608
N
0.956
PGSC0003DMG400045649
Solanum tuberosum
PGSC0003DMG400045649
N
0.933
PGSC0003DMG400044231
Solanum tuberosum
PGSC0003DMG400044231
N
0.933
Solyc12g016150.1
Solanum lycopersicum
Solyc12g016150.1
N
0.848
Solyc12g017300.1
Solanum lycopersicum
Solyc12g017300.1
N
0.833
PGSC0003DMG400044285
Solanum tuberosum
PGSC0003DMG400044285
N
0.833
PGSC0003DMG400035476
Solanum tuberosum
PGSC0003DMG400035476
N
0.756