Pavir.J09556 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.J09556 T258942_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.729 0.729
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729 0.729
MLOC_61901
M10964_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708 0.708
MADS26
M10974_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.708 0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708 0.708
Q41829_MAIZE
M10977_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J09556.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Panicum virgatum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.708
MADS50 Oryza sativa OS03G0122600 D 0.729
AGL12 Arabidopsis thaliana AT1G71692 D 0.729
MADS26 Oryza sativa OS08G0112700 D 0.708
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.708
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.708
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.854
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.708
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.729
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.854
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.708
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.729
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.708
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.708
TCM_036568 Theobroma cacao TCM_036568 I 0.771
Ca_19954 Cicer arietinum Ca_19954 I 0.750
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.708
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.766
Ca_16423 Cicer arietinum Ca_16423 I 0.708
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.750
TT16 Vitis vinifera VIT_10s0042g00820 I 0.708
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.708
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.729
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.766
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.854
Traes_7DS_7F8C88C92 Triticum aestivum Traes_7DS_7F8C88C92 I 0.702
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.766
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.766
TCM_015049 Theobroma cacao TCM_015049 I 0.708
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.750
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.750
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.708
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.750
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.729
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.750
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.729
MADS31 Oryza sativa OS04G0614100 I 0.771
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.723
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.729
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.729
Si038299m.g Setaria italica Si038299m.g I 0.729
Si038257m.g Setaria italica Si038257m.g I 0.708
Si030802m.g Setaria italica Si030802m.g I 0.708
Si014419m.g Setaria italica Si014419m.g I 0.729
Si012632m.g Setaria italica Si012632m.g I 0.830
Si007187m.g Setaria italica Si007187m.g I 0.708
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.729
Sb06g028420 Sorghum bicolor Sb06g028420 I 0.729
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.771
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.750
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.771
Pavir.Gb00526 Panicum virgatum Pavir.Gb00526 I 0.750
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.833
Pavir.Ga00461 Panicum virgatum Pavir.Ga00461 I 0.729
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.729
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.750
MDP0000316609 Malus domestica MDP0000316609 I 0.729
MDP0000193953 Malus domestica MDP0000193953 I 0.729
MDP0000192806 Malus domestica MDP0000192806 I 0.729
MDP0000144597 Malus domestica MDP0000144597 I 0.708
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.830
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.723
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.750
PK26896.1 Cannabis sativa PK26896.1 I 0.723
PK19764.1 Cannabis sativa PK19764.1 I 0.708
PK12001.1 Cannabis sativa PK12001.1 I 0.708
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.723
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.750
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.750
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.750
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.708
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.729
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.729
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.771
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.729
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.729
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.702
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.729
mgf017448m Mimulus guttatus mgf017448m I 0.750
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.750
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.787
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.750
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
29907.m000663 Ricinus communis 29907.m000663 I 0.708
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.729
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.729
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.771
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.771
Gorai.008G242700 Gossypium raimondii Gorai.008G242700 I 0.708
Gorai.007G093800 Gossypium raimondii Gorai.007G093800 I 0.729
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.708
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.708
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.750
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.792
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.771
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
Pm004239 Prunus mume Pm004239 I 0.723
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.708
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.708
GRMZM2G137387 Zea mays GRMZM2G137387 I 0.708
GRMZM2G135018 Zea mays GRMZM2G135018 I 0.729
GRMZM2G128953 Zea mays GRMZM2G128953 I 0.708
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.729
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.723
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.708
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.708
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.809
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.729
GRMZM2G005155 Zea mays GRMZM2G005155 I 0.729
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.708
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.787
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.771
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.875
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.729
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.787
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.729
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.750
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
GSMUA_Achr1G24070_001 Musa acuminata GSMUA_Achr1G24070_001 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.792
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.750
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.750
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.729
Bra007972 Brassica rapa Bra007972 I 0.729
Bra003919 Brassica rapa Bra003919 I 0.723
Bo6g113110 Brassica oleracea Bo6g113110 I 0.729
Bo6g094120 Brassica oleracea Bo6g094120 I 0.723
Bo2g073010 Brassica oleracea Bo2g073010 I 0.729
MADS56 Oryza indica BGIOSGA033356 I 0.729
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.771
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.867
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.872
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.766
Bra016128 Brassica rapa Bra016128 I 0.750
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I 0.729
F775_52406 Aegilops tauschii F775_52406 I 0.708
F775_26271 Aegilops tauschii F775_26271 I 0.766
F775_15098 Aegilops tauschii F775_15098 I 0.702
F775_08627 Aegilops tauschii F775_08627 I 0.708
F775_05799 Aegilops tauschii F775_05799 I 0.854
F775_05654 Aegilops tauschii F775_05654 I 0.729
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.708
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.830
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.723
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.723
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.771
AC233912.1_FG001 Zea mays AC233912.1_FG001 I 0.708
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.766
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.729
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.729
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.729
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.708
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.875
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.833
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.729
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.729
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.771
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.854
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.875
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.729
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.833
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.771
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.708
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.771
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.875
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.875
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.729
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.729
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.708
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.771
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.729
OPUNC10G15300 Oryza punctata OPUNC10G15300 I 0.708
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.766
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.868
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.875
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.750
OBART04G13770 Oryza barthii OBART04G13770 I 0.854
OBART03G01800 Oryza barthii OBART03G01800 I 0.729
OB10G24040 Oryza brachyantha OB10G24040 I 0.729
OB08G11080 Oryza brachyantha OB08G11080 I 0.766
OB04G32080 Oryza brachyantha OB04G32080 I 0.729
OB04G21020 Oryza brachyantha OB04G21020 I 0.872
OB03G11760 Oryza brachyantha OB03G11760 I 0.729
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.750
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.766
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.729
OBART04G13800 Oryza barthii OBART04G13800 I 0.875
OBART04G25610 Oryza barthii OBART04G25610 I 0.771
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.729
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.729
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.729
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.771
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.875
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.854
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.729
OBART10G16960 Oryza barthii OBART10G16960 I 0.729
OBART08G00930 Oryza barthii OBART08G00930 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.729