CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J09556
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.J09556
T258942_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.729
0.729
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.708
0.708
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.708
0.708
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.708
0.708
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J09556.1.p
MADS box
10
57
RIENPAHRQVTFSKRRMGLLKKANELSVLCDVDIGVIVFSPHGMMYEL
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.875
OBART04G13800
Oryza barthii
OBART04G13800
I
0.875
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.875
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.875
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.875
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.875
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.875
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.875
OB04G21020
Oryza brachyantha
OB04G21020
I
0.872
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.872
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.868
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.867
OBART04G13770
Oryza barthii
OBART04G13770
I
0.854
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.854
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.854
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.854
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.854
F775_05799
Aegilops tauschii
F775_05799
I
0.854
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.854
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.833
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.833
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.833
Si012632m.g
Setaria italica
Si012632m.g
I
0.830
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.830
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.830
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.809
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.792
GSMUA_Achr11G21460_001
Musa acuminata
GSMUA_Achr11G21460_001
I
0.792
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.787
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.787
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.787
OBART04G25610
Oryza barthii
OBART04G25610
I
0.771
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.771
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.771
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.771
LPERR04G20730
Leersia perrieri
LPERR04G20730
I
0.771
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.771
MADS31
Oryza sativa
OS04G0614100
I
0.771
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.771
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.771
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.771
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.771
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.771
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.771
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.771
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.771
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.771
TCM_036568
Theobroma cacao
TCM_036568
I
0.771
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.766
OB08G11080
Oryza brachyantha
OB08G11080
I
0.766
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.766
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.766
F775_26271
Aegilops tauschii
F775_26271
I
0.766
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.766
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.766
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.766
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.766
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.766
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.750
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.750
mgf017448m
Mimulus guttatus
mgf017448m
I
0.750
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.750
OLONG_021245
Oryza longistaminata
OLONG_021245
I
0.750
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.750
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.750
Bra016128
Brassica rapa
Bra016128
I
0.750
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.750
Ca_19954
Cicer arietinum
Ca_19954
I
0.750
Cla012709
Citrullus lanatus
Cla012709
I
0.750
GSMUA_Achr2G04340_001
Musa acuminata
GSMUA_Achr2G04340_001
I
0.750
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.750
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.750
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.750
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.750
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.750
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.750
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.750
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.750
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.750
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.750
Pavir.Gb00526
Panicum virgatum
Pavir.Gb00526
I
0.750
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.729
AGL12
Arabidopsis thaliana
AT1G71692
D
0.729
Traes_2AL_8DF89AA72
Triticum aestivum
Traes_2AL_8DF89AA72
I
0.729
Sb01g030570
Sorghum bicolor
Sb01g030570
I
0.729
MADS50
Oryza sativa
OS03G0122600
D
0.729
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.729
Traes_2DL_6CD5A5CD9
Triticum aestivum
Traes_2DL_6CD5A5CD9
I
0.729
Gorai.007G093800
Gossypium raimondii
Gorai.007G093800
I
0.729
MDP0000192806
Malus domestica
MDP0000192806
I
0.729
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.729
MADS56
Oryza sativa
OS10G0536100
I
0.729
TRIUR3_18402
Triticum urartu
TRIUR3_18402
I
0.729
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.729
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.729
Sb06g028420
Sorghum bicolor
Sb06g028420
I
0.729
Aquca_013_00471
Aquilegia coerulea
Aquca_013_00471
I
0.729
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.729
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.729
Si038299m.g
Setaria italica
Si038299m.g
I
0.729
Si014419m.g
Setaria italica
Si014419m.g
I
0.729
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.729
Aquca_035_00266
Aquilegia coerulea
Aquca_035_00266
I
0.729
Bra007972
Brassica rapa
Bra007972
I
0.729
Pavir.Ga00461
Panicum virgatum
Pavir.Ga00461
I
0.729
MLOC_12133
Hordeum vulgare
MLOC_12133
I
0.729
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.729
MADS56
Oryza indica
BGIOSGA033356
I
0.729
OB03G11760
Oryza brachyantha
OB03G11760
I
0.729
OB04G32080
Oryza brachyantha
OB04G32080
I
0.729
OBART10G16960
Oryza barthii
OBART10G16960
I
0.729
Pavir.Bb00065
Panicum virgatum
Pavir.Bb00065
I
0.729
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.729
OB10G24040
Oryza brachyantha
OB10G24040
I
0.729
LPERR03G01640
Leersia perrieri
LPERR03G01640
I
0.729
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.729
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.729
GRMZM2G005155
Zea mays
GRMZM2G005155
I
0.729
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.729
F775_05654
Aegilops tauschii
F775_05654
I
0.729
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.729
GRMZM2G135018
Zea mays
GRMZM2G135018
I
0.729
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.729
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.729
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.729
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.729
OBART03G01800
Oryza barthii
OBART03G01800
I
0.729
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.729
BRADI1G77020
Brachypodium distachyon
BRADI1G77020
I
0.729
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.729
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.729
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.729
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.729
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.729
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.729
MDP0000316609
Malus domestica
MDP0000316609
I
0.729
MDP0000193953
Malus domestica
MDP0000193953
I
0.729
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.729
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.729
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.729
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.729
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.729
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.723
PK26896.1
Cannabis sativa
PK26896.1
I
0.723
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.723
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.723
Pm004239
Prunus mume
Pm004239
I
0.723
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.723
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.723
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.723
Bra003919
Brassica rapa
Bra003919
I
0.723
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.723
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
PK19764.1
Cannabis sativa
PK19764.1
I
0.708
SapurV1A.0578s0130
Salix purpurea
SapurV1A.0578s0130
I
0.708
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.708
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.708
PK12001.1
Cannabis sativa
PK12001.1
I
0.708
gene13354-v1.0-hybrid
Fragaria vesca
gene13354-v1.0-hybrid
I
0.708
Lus10027404.g
Linum usitatissimum
Lus10027404.g
I
0.708
MDP0000144597
Malus domestica
MDP0000144597
I
0.708
Lus10031665.g
Linum usitatissimum
Lus10031665.g
I
0.708
Gorai.008G242700
Gossypium raimondii
Gorai.008G242700
I
0.708
Pavir.Ba03990
Panicum virgatum
Pavir.Ba03990
I
0.708
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.708
MLOC_61901
Hordeum vulgare
MLOC_61901
D
0.708
MTR_8g033220
Medicago truncatula
MTR_8g033220
I
0.708
LPERR07G18670
Leersia perrieri
LPERR07G18670
I
0.708
LPERR07G00480
Leersia perrieri
LPERR07G00480
I
0.708
GSMUA_Achr2G02660_001
Musa acuminata
GSMUA_Achr2G02660_001
I
0.708
OBART08G00930
Oryza barthii
OBART08G00930
I
0.708
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.708
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.708
OPUNC10G15300
Oryza punctata
OPUNC10G15300
I
0.708
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.708
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.708
GSMUA_Achr1G24070_001
Musa acuminata
GSMUA_Achr1G24070_001
I
0.708
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.708
F775_52406
Aegilops tauschii
F775_52406
I
0.708
F775_08627
Aegilops tauschii
F775_08627
I
0.708
BRADI5G21700
Brachypodium distachyon
BRADI5G21700
I
0.708
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.708
GRMZM2G070034
Zea mays
GRMZM2G070034
I
0.708
GRMZM2G072582
Zea mays
GRMZM2G072582
I
0.708
GRMZM2G171365
Zea mays
GRMZM2G171365
I
0.708
GRMZM2G148693
Zea mays
GRMZM2G148693
I
0.708
GRMZM2G137387
Zea mays
GRMZM2G137387
I
0.708
GRMZM2G128953
Zea mays
GRMZM2G128953
I
0.708
AC233912.1_FG001
Zea mays
AC233912.1_FG001
I
0.708
MADS26
Oryza sativa
OS08G0112700
D
0.708
Traes_2BL_26F24E716
Triticum aestivum
Traes_2BL_26F24E716
I
0.708
Traes_2AL_20C2D79E1
Triticum aestivum
Traes_2AL_20C2D79E1
I
0.708
Traes_1DL_D5BBCA2D0
Triticum aestivum
Traes_1DL_D5BBCA2D0
I
0.708
cassava15798.m1
Manihot esculenta
cassava15798.m1
I
0.708
Traes_2DL_903A29CBA
Triticum aestivum
Traes_2DL_903A29CBA
I
0.708
Traes_4DL_5633C0561
Triticum aestivum
Traes_4DL_5633C0561
I
0.708
29907.m000663
Ricinus communis
29907.m000663
I
0.708
Ca_16423
Cicer arietinum
Ca_16423
I
0.708
TT16
Vitis vinifera
VIT_10s0042g00820
I
0.708
TRIUR3_21876
Triticum urartu
TRIUR3_21876
I
0.708
Solyc08g080100.2
Solanum lycopersicum
Solyc08g080100.2
I
0.708
TCM_015049
Theobroma cacao
TCM_015049
I
0.708
Si038257m.g
Setaria italica
Si038257m.g
I
0.708
PGSC0003DMG400000008
Solanum tuberosum
PGSC0003DMG400000008
I
0.708
POPTR_0014s07020
Populus trichocarpa
POPTR_0014s07020
I
0.708
PGSC0003DMG400022748
Solanum tuberosum
PGSC0003DMG400022748
I
0.708
Q41829_MAIZE
Zea mays
Q41829_MAIZE
D
0.708
Q9FR84_MAIZE
Zea mays
Q9FR84_MAIZE
D
0.708
Si030802m.g
Setaria italica
Si030802m.g
I
0.708
Si007187m.g
Setaria italica
Si007187m.g
I
0.708
Sb02g001090
Sorghum bicolor
Sb02g001090
I
0.708
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
Traes_7DS_7F8C88C92
Triticum aestivum
Traes_7DS_7F8C88C92
I
0.702
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.702
F775_15098
Aegilops tauschii
F775_15098
I
0.702