BRADI5G11270 (Brachypodium distachyon)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 BRADI5G11270 T253433_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.809 0.809
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.809 0.809
Q43616_PETHY
M11004_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP7_01 		0.723 0.723
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.702 0.702
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.702 0.702
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.702 0.702
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI5G11270.1 MADS box 10 56

Links

Other MADS box family TFs
Other Brachypodium distachyon TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.967
OB04G21020 Oryza brachyantha OB04G21020 I 0.957
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.957
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.957
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.957
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.957
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.957
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.957
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.957
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.957
OBART04G13800 Oryza barthii OBART04G13800 I 0.957
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.957
Si012632m.g Setaria italica Si012632m.g I 0.936
OBART04G13770 Oryza barthii OBART04G13770 I 0.936
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.936
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.936
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.915
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.915
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.915
F775_05799 Aegilops tauschii F775_05799 I 0.915
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.915
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.915
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.915
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.896
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.851
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.851
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.851
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.851
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.830
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.830
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.830
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.830
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.812
Cla012709 Citrullus lanatus Cla012709 I 0.812
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.809
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.809
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.809
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.809
TCM_036568 Theobroma cacao TCM_036568 I 0.809
mgf017448m Mimulus guttatus mgf017448m I 0.809
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.809
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.809
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.809
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.809
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.809
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.809
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.809
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.809
MADS26 Oryza sativa OS08G0112700 D 0.809
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.809
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.809
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.809
MDP0000316609 Malus domestica MDP0000316609 I 0.809
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.809
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.809
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.809
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.809
Ca_19954 Cicer arietinum Ca_19954 I 0.809
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.809
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.809
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.809
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.809
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.809
F775_26271 Aegilops tauschii F775_26271 I 0.809
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.809
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.809
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.809
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.809
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.809
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.809
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.809
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.809
Bra016128 Brassica rapa Bra016128 I 0.809
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.809
OBART08G00930 Oryza barthii OBART08G00930 I 0.809
Bra007972 Brassica rapa Bra007972 I 0.809
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.809
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.809
Bo2g073010 Brassica oleracea Bo2g073010 I 0.809
AGL12 Arabidopsis thaliana AT1G71692 D 0.809
OB08G11080 Oryza brachyantha OB08G11080 I 0.809
Bo6g113110 Brassica oleracea Bo6g113110 I 0.809
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.792
MDP0000193953 Malus domestica MDP0000193953 I 0.787
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.787
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.787
MDP0000192806 Malus domestica MDP0000192806 I 0.787
Si014419m.g Setaria italica Si014419m.g I 0.787
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.787
29907.m000663 Ricinus communis 29907.m000663 I 0.787
Pm004239 Prunus mume Pm004239 I 0.787
Bra003919 Brassica rapa Bra003919 I 0.787
PK26896.1 Cannabis sativa PK26896.1 I 0.787
Bo6g094120 Brassica oleracea Bo6g094120 I 0.787
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.787
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.787
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.787
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.766
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.766
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.766
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.745
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.745
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.723
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.723
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.723
F775_07497 Aegilops tauschii F775_07497 I 0.723
TRIUR3_24724 Triticum urartu TRIUR3_24724 I 0.723
MLOC_65843 Hordeum vulgare MLOC_65843 I 0.723
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.723
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.723
MADS31 Oryza sativa OS04G0614100 I 0.723
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.723
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.723
OBART04G25610 Oryza barthii OBART04G25610 I 0.723
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.723
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.723
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.723
OBART03G01800 Oryza barthii OBART03G01800 I 0.723
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.723
Traes_1DL_6DA0DFC5B Triticum aestivum Traes_1DL_6DA0DFC5B I 0.723
OB03G11760 Oryza brachyantha OB03G11760 I 0.723
Q43616_PETHY Petunia x hybrida Q43616_PETHY D 0.723
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.723
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.723
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.723
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.723
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.723
Traes_1BL_B44C0D37C Triticum aestivum Traes_1BL_B44C0D37C I 0.723
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.723
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.723
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.723
MADS50 Oryza sativa OS03G0122600 D 0.723
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.723
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.723
PGSC0003DMG400005176 Solanum tuberosum PGSC0003DMG400005176 I 0.723
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.723
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.723
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.723
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.723
Si038299m.g Setaria italica Si038299m.g I 0.723
Si024640m.g Setaria italica Si024640m.g I 0.723
Traes_1AL_5F5A87122 Triticum aestivum Traes_1AL_5F5A87122 I 0.723
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.723
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
Eucgr.E02863 Eucalyptus grandis Eucgr.E02863 I 0.702
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.702
PK19764.1 Cannabis sativa PK19764.1 I 0.702
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.702
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.702
MDP0000135652 Malus domestica MDP0000135652 I 0.702
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.702
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.702
MDP0000144516 Malus domestica MDP0000144516 I 0.702
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.702
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.702
MDP0000144597 Malus domestica MDP0000144597 I 0.702
MADS56 Oryza sativa OS10G0536100 I 0.702
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.702
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.702
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.702
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.702
OB10G24040 Oryza brachyantha OB10G24040 I 0.702
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.702
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.702
OBART10G16960 Oryza barthii OBART10G16960 I 0.702
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.702
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.702
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.702
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.702
MADS56 Oryza indica BGIOSGA033356 I 0.702
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.702
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.702
GSMUA_Achr11G19540_001 Musa acuminata GSMUA_Achr11G19540_001 I 0.702
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.702
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.702
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.702
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.702
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.702
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.702
PRUPE_ppa019906mg Prunus persica PRUPE_ppa019906mg I 0.702
Ca_16423 Cicer arietinum Ca_16423 I 0.702
Pm024524 Prunus mume Pm024524 I 0.702
Aquca_136_00009 Aquilegia coerulea Aquca_136_00009 I 0.702
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.702
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.702
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.702
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.702
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.702
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.702
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.702
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.702
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.702
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.702
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.702
Aquca_136_00010 Aquilegia coerulea Aquca_136_00010 I 0.702