Sb08g006430 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb08g006430 T256088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.723 0.723
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.723 0.723
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.723 0.723
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.723 0.723
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.702 0.702
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.702 0.702
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.702 0.702
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.702 0.702
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.702 0.702
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.702 0.702
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.702 0.702
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.702 0.702
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.702 0.702
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb08g006430.1 MADS box 10 56

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.957
Si024640m.g Setaria italica Si024640m.g I 0.915
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.851
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.851
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.800
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.789
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.767
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.766
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.750
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.750
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.750
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.750
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.745
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.745
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.745
F775_26271 Aegilops tauschii F775_26271 I 0.745
OB04G21020 Oryza brachyantha OB04G21020 I 0.745
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.745
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.745
Bo6g094120 Brassica oleracea Bo6g094120 I 0.745
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.745
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.745
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.745
MDP0000316609 Malus domestica MDP0000316609 I 0.745
Bra003919 Brassica rapa Bra003919 I 0.745
Pm004239 Prunus mume Pm004239 I 0.745
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.745
OB08G11080 Oryza brachyantha OB08G11080 I 0.745
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.745
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.745
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.745
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.729
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.729
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.729
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.729
TCM_024579 Theobroma cacao TCM_024579 I 0.729
TCM_036568 Theobroma cacao TCM_036568 I 0.729
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.729
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.729
OBART04G13800 Oryza barthii OBART04G13800 I 0.729
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.729
Gorai.007G360800 Gossypium raimondii Gorai.007G360800 I 0.729
F775_05799 Aegilops tauschii F775_05799 I 0.729
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.729
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.729
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.729
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.729
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.729
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.729
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.729
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.729
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.729
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.729
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.729
Si014419m.g Setaria italica Si014419m.g I 0.723
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.723
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.723
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.723
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.723
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.723
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.723
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.723
PK20651.1 Cannabis sativa PK20651.1 I 0.723
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.723
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.723
MADS26 Oryza sativa OS08G0112700 D 0.723
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.723
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.723
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.723
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.723
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.723
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.723
Bra007972 Brassica rapa Bra007972 I 0.723
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.723
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.723
Bo6g113110 Brassica oleracea Bo6g113110 I 0.723
OBART08G00930 Oryza barthii OBART08G00930 I 0.723
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.723
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.723
Bo2g073010 Brassica oleracea Bo2g073010 I 0.723
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.723
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.723
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.723
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.723
AGL12 Arabidopsis thaliana AT1G71692 D 0.723
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.723
PK27158.1 Cannabis sativa PK27158.1 I 0.714
MADS29 Oryza sativa OS02G0170300 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Aquca_013_00477 Aquilegia coerulea Aquca_013_00477 I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
MDP0000193953 Malus domestica MDP0000193953 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
O82699_MALDO Malus domestica O82699_MALDO D 0.708
MDP0000192806 Malus domestica MDP0000192806 I 0.708
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.708
Bra016128 Brassica rapa Bra016128 I 0.708
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.708
MDP0000149676 Malus domestica MDP0000149676 I 0.708
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.708
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
OBART04G13770 Oryza barthii OBART04G13770 I 0.708
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
AMTR_s00001p00267050 Amborella trichopoda AMTR_s00001p00267050 I 0.708
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.702
Bo8g101000 Brassica oleracea Bo8g101000 I 0.702
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.702
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.702
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.702
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.702
AGL15 Arabidopsis thaliana AT5G13790 D 0.702
SVP Arabidopsis thaliana AT2G22540 D 0.702
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.702
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.702
TT16 Vitis vinifera VIT_01s0011g01560 I 0.702
SVP Vitis vinifera VIT_00s0313g00070 I 0.702
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.702
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.702
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.702
OLONG_005831 Oryza longistaminata OLONG_005831 I 0.702
TCM_015049 Theobroma cacao TCM_015049 I 0.702
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.702
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.702
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.702
Si012632m.g Setaria italica Si012632m.g I 0.702
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.702
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.702
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.702
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.702
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.702
Bra038511 Brassica rapa Bra038511 I 0.702
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.702
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.702
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.702
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.702
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.702
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.702
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.702
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.702