Si024640m.g (Setaria italica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Si024640m.g T256241_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.766 0.766
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.723 0.723
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.702 0.702
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si024640m MADS box 10 56

Links

Other MADS box family TFs
Other Setaria italica TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.957
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.915
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.867
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.851
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.851
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.842
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.833
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.787
F775_26271 Aegilops tauschii F775_26271 I 0.787
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.787
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.787
OB08G11080 Oryza brachyantha OB08G11080 I 0.787
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.787
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.787
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.787
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.787
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.787
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.766
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.766
OBART08G00930 Oryza barthii OBART08G00930 I 0.766
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.766
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.766
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.766
Si014419m.g Setaria italica Si014419m.g I 0.766
MADS26 Oryza sativa OS08G0112700 D 0.766
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.766
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.766
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.766
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.766
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.766
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.766
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.766
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.745
Si012632m.g Setaria italica Si012632m.g I 0.745
Bo6g094120 Brassica oleracea Bo6g094120 I 0.745
MDP0000316609 Malus domestica MDP0000316609 I 0.745
Bra003919 Brassica rapa Bra003919 I 0.745
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.745
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.745
OB04G21020 Oryza brachyantha OB04G21020 I 0.745
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.745
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.745
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.745
TCM_036568 Theobroma cacao TCM_036568 I 0.729
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.729
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.729
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.729
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.729
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.729
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.729
OBART04G13800 Oryza barthii OBART04G13800 I 0.729
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.729
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.729
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.729
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.729
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.729
F775_05799 Aegilops tauschii F775_05799 I 0.729
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.729
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Pm004239 Prunus mume Pm004239 I 0.723
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.723
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.723
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.723
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.723
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.723
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.723
AGL12 Arabidopsis thaliana AT1G71692 D 0.723
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.723
29907.m000663 Ricinus communis 29907.m000663 I 0.723
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.723
Bo2g073010 Brassica oleracea Bo2g073010 I 0.723
Bra007972 Brassica rapa Bra007972 I 0.723
Bo6g113110 Brassica oleracea Bo6g113110 I 0.723
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.723
Bra016128 Brassica rapa Bra016128 I 0.723
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.723
PK26896.1 Cannabis sativa PK26896.1 I 0.723
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.723
PK27158.1 Cannabis sativa PK27158.1 I 0.714
OBART04G13770 Oryza barthii OBART04G13770 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.708
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.708
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
MDP0000192806 Malus domestica MDP0000192806 I 0.708
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.708
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
MDP0000193953 Malus domestica MDP0000193953 I 0.708
GSMUA_Achr8G28100_001 Musa acuminata GSMUA_Achr8G28100_001 I 0.702
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.702
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.702
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.702
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.702
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.702
mgf008635m Mimulus guttatus mgf008635m I 0.702
TCM_015049 Theobroma cacao TCM_015049 I 0.702
TCM_024579 Theobroma cacao TCM_024579 I 0.702
Bo7g116760 Brassica oleracea Bo7g116760 I 0.702
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.702
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.702
Bra017638 Brassica rapa Bra017638 I 0.702
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.702
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.702
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.702
STK Vitis vinifera VIT_18s0041g01880 I 0.702
mgf011060m Mimulus guttatus mgf011060m I 0.702
mgf021543m Mimulus guttatus mgf021543m I 0.702
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.702
mgf009713m Mimulus guttatus mgf009713m I 0.702
mgf005317m Mimulus guttatus mgf005317m I 0.702
Pm021962 Prunus mume Pm021962 I 0.702
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.702
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.702