Pavir.Ga01731 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Ga01731 T258912_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.787 0.787
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.787 0.787
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.723 0.723
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.702 0.702
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.702 0.702
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.702 0.702
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01731.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Panicum virgatum TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.979
Si012632m.g Setaria italica Si012632m.g I 0.979
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.947
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.936
OB04G21020 Oryza brachyantha OB04G21020 I 0.936
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.936
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.933
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.917
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.917
OBART04G13800 Oryza barthii OBART04G13800 I 0.917
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.917
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.917
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.917
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.917
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.917
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.915
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.915
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.915
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.900
OBART04G13770 Oryza barthii OBART04G13770 I 0.896
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.896
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.875
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.875
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.875
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.875
F775_05799 Aegilops tauschii F775_05799 I 0.875
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.851
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.833
F775_26271 Aegilops tauschii F775_26271 I 0.830
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.830
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.830
OB08G11080 Oryza brachyantha OB08G11080 I 0.830
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.830
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.830
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.830
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.830
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.830
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.830
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.830
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.830
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.830
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.812
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.809
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.809
PK26896.1 Cannabis sativa PK26896.1 I 0.809
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.809
29907.m000663 Ricinus communis 29907.m000663 I 0.809
Si014419m.g Setaria italica Si014419m.g I 0.809
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.809
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.792
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.792
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.788
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.787
Bo6g113110 Brassica oleracea Bo6g113110 I 0.787
Bo2g073010 Brassica oleracea Bo2g073010 I 0.787
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.787
MDP0000316609 Malus domestica MDP0000316609 I 0.787
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.787
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.787
MADS26 Oryza sativa OS08G0112700 D 0.787
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.787
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.787
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.787
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.787
OBART08G00930 Oryza barthii OBART08G00930 I 0.787
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.787
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.787
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.787
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.787
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.787
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.787
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.787
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.787
Bra016128 Brassica rapa Bra016128 I 0.787
Bra007972 Brassica rapa Bra007972 I 0.787
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.787
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.787
AGL12 Arabidopsis thaliana AT1G71692 D 0.787
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.771
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.771
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.771
TCM_036568 Theobroma cacao TCM_036568 I 0.771
Ca_19954 Cicer arietinum Ca_19954 I 0.771
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.771
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.771
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.771
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.771
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.771
mgf017448m Mimulus guttatus mgf017448m I 0.771
Cla012709 Citrullus lanatus Cla012709 I 0.771
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.771
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.771
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.771
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.771
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.771
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.766
Pm004239 Prunus mume Pm004239 I 0.766
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.766
Bo6g094120 Brassica oleracea Bo6g094120 I 0.766
Bra003919 Brassica rapa Bra003919 I 0.766
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759
MDP0000192806 Malus domestica MDP0000192806 I 0.750
MDP0000193953 Malus domestica MDP0000193953 I 0.750
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.745
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.745
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.745
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.729
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.729
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.723
Si024640m.g Setaria italica Si024640m.g I 0.723
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.723
PK19764.1 Cannabis sativa PK19764.1 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.708
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.708
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OBART04G25610 Oryza barthii OBART04G25610 I 0.708
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.708
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.708
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.708
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.708
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.708
Si038299m.g Setaria italica Si038299m.g I 0.708
Pm024524 Prunus mume Pm024524 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.708
PRUPE_ppa019906mg Prunus persica PRUPE_ppa019906mg I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.708
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.708
MADS31 Oryza sativa OS04G0614100 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
GSMUA_Achr11G19540_001 Musa acuminata GSMUA_Achr11G19540_001 I 0.702
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.702
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.702
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.702
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.702
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.702
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.702
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.702
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.702