Sb06g017660 (Sorghum bicolor)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Sb06g017660 T256076_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.787 0.787
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.766 0.766
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g017660.1 MADS box 10 56

Links

Other MADS box family TFs
Other Sorghum bicolor TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.957
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.936
Si012632m.g Setaria italica Si012632m.g I 0.936
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.933
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.921
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.915
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.915
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.915
OB04G21020 Oryza brachyantha OB04G21020 I 0.915
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.900
OBART04G13800 Oryza barthii OBART04G13800 I 0.896
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.896
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.896
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.896
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.896
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.896
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.896
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.896
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.896
OBART04G13770 Oryza barthii OBART04G13770 I 0.875
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.875
F775_05799 Aegilops tauschii F775_05799 I 0.854
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.854
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.854
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.854
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.854
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.830
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.830
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.830
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.830
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.809
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.809
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.809
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.809
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.809
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.809
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.809
PK26896.1 Cannabis sativa PK26896.1 I 0.809
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.809
OB08G11080 Oryza brachyantha OB08G11080 I 0.809
Si014419m.g Setaria italica Si014419m.g I 0.809
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.809
29907.m000663 Ricinus communis 29907.m000663 I 0.809
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.809
F775_26271 Aegilops tauschii F775_26271 I 0.809
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.809
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.809
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.792
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.792
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.792
MDP0000316609 Malus domestica MDP0000316609 I 0.787
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.787
Pm004239 Prunus mume Pm004239 I 0.787
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.787
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.787
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.787
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.787
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.787
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.787
Bo2g073010 Brassica oleracea Bo2g073010 I 0.787
Bo6g113110 Brassica oleracea Bo6g113110 I 0.787
Bra007972 Brassica rapa Bra007972 I 0.787
AGL12 Arabidopsis thaliana AT1G71692 D 0.787
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.771
TCM_036568 Theobroma cacao TCM_036568 I 0.771
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.771
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.771
Bra016128 Brassica rapa Bra016128 I 0.771
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.771
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.771
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.771
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.771
Cla012709 Citrullus lanatus Cla012709 I 0.771
mgf017448m Mimulus guttatus mgf017448m I 0.771
Ca_19954 Cicer arietinum Ca_19954 I 0.771
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.771
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.771
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.771
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.771
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.771
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.771
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.771
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.771
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.771
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.766
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.766
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.766
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.766
OBART08G00930 Oryza barthii OBART08G00930 I 0.766
Bra003919 Brassica rapa Bra003919 I 0.766
Bo6g094120 Brassica oleracea Bo6g094120 I 0.766
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.766
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.766
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.766
MADS26 Oryza sativa OS08G0112700 D 0.766
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.766
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.766
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.758
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.750
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.750
MDP0000193953 Malus domestica MDP0000193953 I 0.750
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.750
MDP0000192806 Malus domestica MDP0000192806 I 0.750
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
MADS31 Oryza sativa OS04G0614100 I 0.729
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.729
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.729
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.729
OBART04G25610 Oryza barthii OBART04G25610 I 0.729
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.729
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.729
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.729
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.723
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
MDP0000144516 Malus domestica MDP0000144516 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.708
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.702
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.702
Si024640m.g Setaria italica Si024640m.g I 0.702
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.702
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.702