Pavir.Ca00337 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Ca00337 T258866_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.766 0.766
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.723 0.723
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.723 0.723
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.723 0.723
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.723 0.723
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.702 0.702
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.702 0.702
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.702 0.702
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.702 0.702
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.702 0.702
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.702 0.702
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.702 0.702
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.702 0.702
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.702 0.702
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00337.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Panicum virgatum TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si024640m.g Setaria italica Si024640m.g I 0.957
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.957
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.851
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.851
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.833
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.816
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.800
F775_26271 Aegilops tauschii F775_26271 I 0.787
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.787
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.787
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.787
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.787
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.787
OB08G11080 Oryza brachyantha OB08G11080 I 0.787
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.787
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.787
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.787
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.766
OBART08G00930 Oryza barthii OBART08G00930 I 0.766
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.766
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.766
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.766
MADS26 Oryza sativa OS08G0112700 D 0.766
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.766
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.766
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.766
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.766
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.766
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.766
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.766
Si014419m.g Setaria italica Si014419m.g I 0.766
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.766
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.750
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.750
MDP0000316609 Malus domestica MDP0000316609 I 0.745
OB04G21020 Oryza brachyantha OB04G21020 I 0.745
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.745
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.745
Bo6g094120 Brassica oleracea Bo6g094120 I 0.745
Bra003919 Brassica rapa Bra003919 I 0.745
Si012632m.g Setaria italica Si012632m.g I 0.745
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.745
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.745
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.745
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.745
PK27158.1 Cannabis sativa PK27158.1 I 0.743
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.729
29804.m001536 Ricinus communis 29804.m001536 I 0.729
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.729
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.729
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.729
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.729
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.729
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.729
TCM_024579 Theobroma cacao TCM_024579 I 0.729
TCM_036568 Theobroma cacao TCM_036568 I 0.729
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.729
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.729
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.729
Gorai.007G360800 Gossypium raimondii Gorai.007G360800 I 0.729
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.729
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.729
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.729
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.729
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.729
OBART04G13800 Oryza barthii OBART04G13800 I 0.729
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.729
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.729
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.729
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.729
F775_05799 Aegilops tauschii F775_05799 I 0.729
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.729
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.729
ANR1 Arabidopsis thaliana AT2G14210 I 0.729
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.729
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.729
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.729
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.723
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.723
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.723
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.723
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.723
Bo6g113110 Brassica oleracea Bo6g113110 I 0.723
PK26896.1 Cannabis sativa PK26896.1 I 0.723
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.723
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.723
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.723
Bo2g073010 Brassica oleracea Bo2g073010 I 0.723
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.723
Bra007972 Brassica rapa Bra007972 I 0.723
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.723
29907.m000663 Ricinus communis 29907.m000663 I 0.723
OBART01G39540 Oryza barthii OBART01G39540 I 0.723
Pm004239 Prunus mume Pm004239 I 0.723
OB01G48280 Oryza brachyantha OB01G48280 I 0.723
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.723
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.723
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.723
MADS2 Oryza sativa OS01G0883100 D 0.723
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.723
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.723
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.723
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.723
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.723
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.723
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.723
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.723
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.723
AGL12 Arabidopsis thaliana AT1G71692 D 0.723
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.723
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.708
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.708
MDP0000193953 Malus domestica MDP0000193953 I 0.708
Aquca_013_00477 Aquilegia coerulea Aquca_013_00477 I 0.708
O82699_MALDO Malus domestica O82699_MALDO D 0.708
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.708
MDP0000192806 Malus domestica MDP0000192806 I 0.708
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.708
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.708
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.708
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
MDP0000149676 Malus domestica MDP0000149676 I 0.708
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.708
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.708
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.708
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.708
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.708
Sb10g026690 Sorghum bicolor Sb10g026690 I 0.708
MADS29 Oryza sativa OS02G0170300 I 0.708
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.708
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.708
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.708
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.708
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.708
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
M17_MAIZE Zea mays M17_MAIZE D 0.708
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.708
OB02G14670 Oryza brachyantha OB02G14670 I 0.708
OBART02G05380 Oryza barthii OBART02G05380 I 0.708
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.708
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.708
OBART04G13770 Oryza barthii OBART04G13770 I 0.708
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.708
BRADI2G24940 Brachypodium distachyon BRADI2G24940 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.708
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.708
Bra016128 Brassica rapa Bra016128 I 0.708
Si002929m.g Setaria italica Si002929m.g I 0.708
AMTR_s00001p00267050 Amborella trichopoda AMTR_s00001p00267050 I 0.708
Si018183m.g Setaria italica Si018183m.g I 0.708
Bo7g025330 Brassica oleracea Bo7g025330 I 0.708
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.708
TCM_007324 Theobroma cacao TCM_007324 I 0.708
SVP Arabidopsis thaliana AT2G22540 D 0.702
AGL15 Arabidopsis thaliana AT5G13790 D 0.702
PK20651.1 Cannabis sativa PK20651.1 I 0.702
CM0547.50.nc Lotus japonicus CM0547.50.nc I 0.702
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.702
TCM_015049 Theobroma cacao TCM_015049 I 0.702
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.702
TT16 Vitis vinifera VIT_01s0011g01560 I 0.702
Pm021962 Prunus mume Pm021962 I 0.702
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.702
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.702
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.702
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.702
mgf021543m Mimulus guttatus mgf021543m I 0.702
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.702
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.702
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.702