CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla012709
(
Citrullus lanatus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cla012709
T256964_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.833
0.833
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.833
0.833
FBP24_PETHY
M10997_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.729
0.729
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.708
0.708
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.708
0.708
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.708
0.708
AGL3
M10910_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.708
0.708
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.708
0.708
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.708
0.708
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.708
0.708
O82699_MALDO
M11022_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla012709
MADS box
10
57
RIENPVHRQVTFCKRRAGLLKKAKELSVLCNAQIGVFIFSAHGKLYEL
Links
Other
MADS box
family TFs
Other
Citrullus lanatus
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.938
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.938
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.938
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.938
mgf017448m
Mimulus guttatus
mgf017448m
I
0.938
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.938
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.938
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.938
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.938
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.938
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.917
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.917
TCM_036568
Theobroma cacao
TCM_036568
I
0.917
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.917
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.917
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.917
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.917
Ca_19954
Cicer arietinum
Ca_19954
I
0.917
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.917
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.896
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.896
MDP0000193953
Malus domestica
MDP0000193953
I
0.896
MDP0000192806
Malus domestica
MDP0000192806
I
0.896
PK26896.1
Cannabis sativa
PK26896.1
I
0.875
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.875
29907.m000663
Ricinus communis
29907.m000663
I
0.875
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.875
MDP0000316609
Malus domestica
MDP0000316609
I
0.875
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.875
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.854
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.854
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.854
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.854
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.854
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.854
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.854
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.854
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.854
Si014419m.g
Setaria italica
Si014419m.g
I
0.854
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.854
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.854
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.854
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.854
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.854
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.854
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.854
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.854
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.854
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.854
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.854
F775_05799
Aegilops tauschii
F775_05799
I
0.854
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.854
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.854
Bra016128
Brassica rapa
Bra016128
I
0.854
F775_26271
Aegilops tauschii
F775_26271
I
0.854
OB08G11080
Oryza brachyantha
OB08G11080
I
0.854
OBART04G13770
Oryza barthii
OBART04G13770
I
0.854
OBART04G13800
Oryza barthii
OBART04G13800
I
0.854
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.833
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.833
Pm004239
Prunus mume
Pm004239
I
0.833
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.833
AGL12
Arabidopsis thaliana
AT1G71692
D
0.833
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.833
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.833
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.833
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.833
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.833
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.833
Bra007972
Brassica rapa
Bra007972
I
0.833
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.833
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.833
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.833
OBART08G00930
Oryza barthii
OBART08G00930
I
0.833
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.833
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.833
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.833
OB04G21020
Oryza brachyantha
OB04G21020
I
0.833
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.833
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.833
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.833
MADS26
Oryza sativa
OS08G0112700
D
0.833
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.833
Bra003919
Brassica rapa
Bra003919
I
0.830
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.830
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.830
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.830
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.812
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.812
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.812
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.809
Si012632m.g
Setaria italica
Si012632m.g
I
0.792
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.792
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.792
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.787
Pavir.Ga01731
Panicum virgatum
Pavir.Ga01731
I
0.771
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.771
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.750
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.750
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.750
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.750
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.750
evm.TU.supercontig_660.1
Carica papaya
evm.TU.supercontig_660.1
I
0.729
orange1.1g036652m.g
Citrus sinensis
orange1.1g036652m.g
I
0.729
Solyc11g005120.1
Solanum lycopersicum
Solyc11g005120.1
I
0.729
BRADI2G57000
Brachypodium distachyon
BRADI2G57000
I
0.729
FBP24_PETHY
Petunia x hybrida
FBP24_PETHY
D
0.729
GSMUA_Achr5G10250_001
Musa acuminata
GSMUA_Achr5G10250_001
I
0.729
Ciclev10032489m.g
Citrus clementina
Ciclev10032489m.g
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
PK27158.1
Cannabis sativa
PK27158.1
I
0.714
XM_002310609.1
Populus trichocarpa
POPTR_0007s07620
I
0.708
MDP0000270062
Malus domestica
MDP0000270062
I
0.708
MDP0000149676
Malus domestica
MDP0000149676
I
0.708
Bra026543
Brassica rapa
Bra026543
I
0.708
O82699_MALDO
Malus domestica
O82699_MALDO
D
0.708
MDP0000248130
Malus domestica
MDP0000248130
I
0.708
POPTR_0003s16800
Populus trichocarpa
POPTR_0003s16800
I
0.708
PGSC0003DMG400000008
Solanum tuberosum
PGSC0003DMG400000008
I
0.708
Thhalv10004767m.g
Eutrema salsugineum
Thhalv10004767m.g
I
0.708
AMTR_s00001p00267050
Amborella trichopoda
AMTR_s00001p00267050
I
0.708
PK21769.1
Cannabis sativa
PK21769.1
I
0.708
MLOC_65843
Hordeum vulgare
MLOC_65843
I
0.708
Bo7g081460
Brassica oleracea
Bo7g081460
I
0.708
Bo9g074400
Brassica oleracea
Bo9g074400
I
0.708
PGSC0003DMG400010263
Solanum tuberosum
PGSC0003DMG400010263
I
0.708
PGSC0003DMG400028359
Solanum tuberosum
PGSC0003DMG400028359
I
0.708
Lus10017388.g
Linum usitatissimum
Lus10017388.g
I
0.708
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.708
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.708
SapurV1A.0068s0650
Salix purpurea
SapurV1A.0068s0650
I
0.708
SapurV1A.0228s0130
Salix purpurea
SapurV1A.0228s0130
I
0.708
SapurV1A.0103s0250
Salix purpurea
SapurV1A.0103s0250
I
0.708
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.708
Eucgr.K00207
Eucalyptus grandis
Eucgr.K00207
I
0.708
Q40591_TOBAC
Nicotiana tabacum
Q40591_TOBAC
D
0.708
Pm019404
Prunus mume
Pm019404
I
0.708
Q9ATE8_PETHY
Petunia x hybrida
Q9ATE8_PETHY
D
0.708
Q9ATE9_PETHY
Petunia x hybrida
Q9ATE9_PETHY
D
0.708
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.708
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.708
SEP4
Arabidopsis lyrata
Al_scaffold_0005_309
I
0.708
Bo2g137070
Brassica oleracea
Bo2g137070
I
0.708
Traes_1AL_5F5A87122
Triticum aestivum
Traes_1AL_5F5A87122
I
0.708
Traes_1DL_6DA0DFC5B
Triticum aestivum
Traes_1DL_6DA0DFC5B
I
0.708
GSMUA_Achr3G23580_001
Musa acuminata
GSMUA_Achr3G23580_001
I
0.708
GSMUA_Achr2G11820_001
Musa acuminata
GSMUA_Achr2G11820_001
I
0.708
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.708
TRIUR3_24724
Triticum urartu
TRIUR3_24724
I
0.708
cassava32526.m1
Manihot esculenta
cassava32526.m1
I
0.708
Si024640m.g
Setaria italica
Si024640m.g
I
0.708
Traes_1BL_B44C0D37C
Triticum aestivum
Traes_1BL_B44C0D37C
I
0.708
F775_07497
Aegilops tauschii
F775_07497
I
0.708
Sb08g006430
Sorghum bicolor
Sb08g006430
I
0.708
evm.TU.supercontig_3.196
Carica papaya
evm.TU.supercontig_3.196
I
0.708
PRUPE_ppa019267mg
Prunus persica
PRUPE_ppa019267mg
I
0.708
Gorai.001G172200
Gossypium raimondii
Gorai.001G172200
I
0.708
SELMODRAFT_449545
Selaginella moellendorffii
SELMODRAFT_449545
I
0.708
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.708
Aquca_013_00477
Aquilegia coerulea
Aquca_013_00477
I
0.708
AGL3
Arabidopsis thaliana
AT2G03710
D
0.708
Bostr.0556s0185
Boechera stricta
Bostr.0556s0185
I
0.708
Cagra.0447s0009
Capsella grandiflora
Cagra.0447s0009
I
0.708
SELMODRAFT_449594
Selaginella moellendorffii
SELMODRAFT_449594
I
0.708
Carubv10017787m.g
Capsella rubella
Carubv10017787m.g
I
0.708
Lus10010184.g
Linum usitatissimum
Lus10010184.g
I
0.708